I wrote SprayNPray to bridge the gap between genome binning and taxonomic QC.
It profiles contigs using taxonomy, coverage, GC content, and gene density—independent of binning.
https://doi.org/10.1186/s12864-022-08382-2
It profiles contigs using taxonomy, coverage, GC content, and gene density—independent of binning.
https://doi.org/10.1186/s12864-022-08382-2
Comments
Still widely used in my own workflows.
It’s straightforward, scriptable, and has a sleek new GUI: https://omix.midauthorbio.com