The Foldseek webserver for fast protein structure searches now features a Sankey tree taxonomy visualization and filter, allowing to subset hits by clades. Developed by my talented student @sunjaelee.bsky.social. Try it out! 🌐 search.foldseek.com - ThreadSky

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martinsteinegger.bsky.social • 132 days ago

The Foldseek webserver for fast protein structure searches now features a Sankey tree taxonomy visualization and filter, allowing to subset hits by clades. Developed by my talented student @sunjaelee.bsky.social. Try it out!
🌐 https://search.foldseek.com

Comments

tomdiethe.com•131 days ago

Still the best use of quantized VAEs I’ve seen (assuming you still use them!)

martinsteinegger.bsky.social•131 days ago

Thank you. We still use the VQ-VAE. However, as an alternative, we now also include the ProstT5 transformer to bypass the need for real structures.

unruhjay.bsky.social•131 days ago

Just used this to find a fungal protein in plants. Very useful!

flowuenne.bsky.social•132 days ago

That looks amazing, congrats @sunjaelee.bsky.social 👏! Is the code to make the sankey diagrams available somewhere? Would love to play around with that 🤩!

sunjaelee.bsky.social•132 days ago

Thank you so much for the kind words!! I’m so happy to hear that you like the Sankey diagrams! I am planning on making this into a reusable component so that it can be easily integrated into your own projects. I will share updates once it is ready! Thanks so much! 😊

alexbateman1.bsky.social•132 days ago

Looks like a really useful development!

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