arjunraj.bsky.social - Profile | ThreadSky | a Reddit-style client for Bluesky

NimbusImage is great for spot analysis using the Piscis model from Will Niu; give it a try! www.nimbusimage.com www.loom.com/share/49d795...

submitted 5 days ago • 0 comments

Awesome work from @atishayjay.bsky.social!

submitted 5 days ago • 0 comments

You can just take academic papers and paste them into Gemini 2.5/ChatGPT o3/Claude 4 with the prompt "build me a game based on this paper, make it interesting and thematic but still conveying key findings" and get a tiny working educational game. (In this case, I used Gemini)

submitted 16 days ago • 9 comments

I wonder if it would be worth doing the exercise of asking, assuming we could measure absolutely everything, what should we not bother measuring?

submitted 19 days ago • 4 comments

Today, I hooded a PhD student who is about to begin an exciting new chapter of their life. Later in the day, I called my PhD advisor to catch up after a few years. A good day, all in all.

submitted 19 days ago • 1 comment

Just like most drivers think they are above average at driving, most scientists think they are above average at writing.

submitted 20 days ago • 5 comments

Are you interested in synthetic and systems biology approaches to study #spatiotemporal processes in cancer? Join NCI for virtual workshops on May 13, 15, & 20 (next week!) from 12:00–4:30 PM ET: registration: events.cancer.gov/nci/syntheti... #SynSysBio4SpatialCancerResearch

submitted 30 days ago • 1 comment

It is somewhat jarring to think that it is reasonable to ask which will happen first: achieving AGI or getting the second round of reviews back on our paper.

submitted 30 days ago • 0 comments

This is the best place in Paris to buy reagents to quench your crosslinking experiment

submitted 30 days ago • 2 comments

Here it is! Bonsai. Now there is really no more excuse for using t-SNE/UMAP. Bonsai not only makes cool pictures of your data. It actually rigorously preserves its structure. No tunable parameters. Incredible work by @dhdegroot.bsky.social. I'm so excited about this! www.biorxiv.org/content/10.1...

submitted 30 days ago • 8 comments

Is it bad that my favorite gene is EEF2 because it gives really good RNA FISH signal?

submitted 31 days ago • 1 comment

Wow, just implemented the new Cellpose-SAM from @computingnature.bsky.social in NimbusImage and it's awesome! Give it a try! nimbusimage.com

submitted 32 days ago • 1 comment

🚀🔬🦠 Releasing 🤖Cellpose-SAM🤖, a cellular segmentation algorithm with superhuman generalization 🦸‍♀️. Try it now on 🤗 huggingface.co/spaces/mouse... paper: www.biorxiv.org/content/10.1... w/ @computingnature.bsky.social 1/n

submitted 36 days ago • 2 comments

While I understand the sentiment, I must disagree. We are already required to do too many different things at a high level. Communicating with the public is not an easy skill and requiring that students be good at it is in some ways another barrier. Instead, make a podcast with NotebookLM!

submitted 33 days ago • 3 comments

Friends. This is the first orchid ever I have not killed, and that has come back to life underneath my very not green thumbs. Please clap.

submitted 34 days ago • 4 comments

New podcast episode about @aofarrell.bsky.social's latest prepeint! creators.spotify.com/pod/show/arj...

submitted 34 days ago • 1 comment

Check out our latest preprint, led by Dr. Siyu Chen, that brings together an amazing team of scientists from several labs ( @vram142.bsky.social, Tavazoie, and Navickas) to tackle a fundamental problem in biology: how do cells regulate expression of their tRNAs? www.biorxiv.org/content/10.1...

submitted 38 days ago • 2 comments

very few things make me as happy as data replication by different hands.

submitted 39 days ago • 2 comments

Honored and humbled. I have been very fortunate to have worked with amazing, inspirational colleagues in my lab, at Penn and in the broader community. Science matters www.nasonline.org/news/2025-na...

submitted 39 days ago • 26 comments

🌍 GloBIAS is now open for members! Join our global community of scientists, developers & microscopists advancing BioImage Analysis. Let’s build tools, share knowledge & shape the field together. 🔗 More information: tinyurl.com/mtvjadex #BioImageAnalysis #GloBIAS #OpenScience

submitted 40 days ago • 0 comments

🚀 Excited to share that our work on BiaPy has been published today in Nature Methods! BiaPy makes deep learning accessible for bioimage analysis, from small datasets to terabyte-scale 3D images. 👇 (1/7) 🔗 www.nature.com/articles/s41... #DeepLearning #BioimageAnalysis #OpenSource #BiaPy

submitted 40 days ago • 1 comment

Pull apart a bronze trilobite (Cryptolithus bellulus) and put it back together. #TrilobiteTuesday #InverteFest (sound on for satisfying clicks)

submitted 40 days ago • 4 comments

So excited to see this live! Awesome work from @giannatbusch.bsky.social on the concept of population-based synergy—using cell-to-cell heterogeneity to uncover new therapeutic vulnerabilities!

submitted 41 days ago • 0 comments

Thank you to @arjunraj.bsky.social, of @pennmedicine.bsky.social, who spoke with us during #AACR25 about sensitivity to second-line inhibitors in treatment-resistant melanoma! Check out our site for more conference insights! @theaacr.bsky.social #melsm #oncology www.onclive.com/conference/a...

submitted 42 days ago • 0 comments

It’s out! The evolutionary origins of yeast point centromeres uncovered! “Ancient co-option of LTR retrotransposons as yeast centromeres” www.biorxiv.org/content/10.1...

submitted 44 days ago • 1 comment

“We tested whether [cellular pathway or process X] upregulates [cellular pathway or process Y]. It does!” (Don’t forget to put p=0.5) “We tested whether [cellular pathway or process X] affects [cellular pathway or process Y]. It does!” (Don’t forget to put p=1.0)

submitted 44 days ago • 0 comments

As a listener, the flip side could be: thank you for not subjecting me to your terrible hand-made presentation and instead giving me something far more clear and comprehensible. I suspect this complaint is actually more about the content itself.

submitted 45 days ago • 0 comments

Check out our paper, now extensively revised and published in @cp-molcell.bsky.social! This has been a real tour de force led by Stephanie Sansbury and @ysereb.bsky.social and we are very excited about the findings and future potential of this approach www.cell.com/molecular-ce...

submitted 46 days ago • 2 comments

It was so much fun to write this review with @usymmons.bsky.social on the conceptual underpinnings of single cell biology!

submitted 45 days ago • 1 comment

Yesterday, we discussed biological questions that need single-cell proteomics, which reminded me of this article: Single cell protein analysis for systems biology portlandpress.com/essaysbioche... 1/2

submitted 45 days ago • 1 comment

this is like one of the two best jokes in computer science

submitted 47 days ago • 6 comments

One of the toughest parts of the field of massively parallel reporter assays to measure >~thousands of elements is that there are hundreds of pubs using them, but no central repo to easily locate the results....until now! Great collab w/ Jingjing Zhao, Ilias G-S, and @nadavahituv.bsky.social!!

submitted 47 days ago • 0 comments