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Professor in bioinformatics, Stockholm University. Protein structure lover ( interactions predictions, evolution ..). Using machine learning as a part of AI for Sciences for halv my life. In addition to succén, I sometimes rants about sailing or skiing.
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All all-atom diffusion model of protein sequences. www.biorxiv.org/content/10.1...

A major KI initiative to recruit new assistant professors with outstanding proposals in all areas of medicine, biomedicine and public health. We offer an amazing research environment, great colleagues and generous startup packages. Check it out and get working on your applications! (repost please!)

"Drogerna har blivit det tydligaste kvittot på det moderna klassamhället där din relation till kokain berättar vilken klass du tillhör."

Please remember to defend all prokaryotes and viruses since they do not have nuclear weapons.

Långvarig västerländsk kost försämrar såväl funktionen hos blodkärl i bukspottkörtelns Langerhanska öar som insulintransport – även efter kostomläggning och viktnedgång enligt en ny studie av forskare från @ki.se #forskning med stöd av Knut och Alice Wallenbergs Stiftelse tinyurl.com/8t8ajmpz

How many PhDs does the world need? Doctoral graduates vastly outnumber jobs in academia www.nature.com/articles/d41...

Donald Trump just unilaterally bombed Iran. A masked gang is terrorizing our streets. America has rapidly devolved into an authoritarian state. That's why, today, The Onion has purchased a full page ad in today's New York Times with a simple plea to Congress: Sit back and do absolutely nothing.

Congress, Now More Than Ever, We Need Your Cowardice

We’re wasting the remaining carbon budget on war and AI.

news.slashdot.org/story/25/06/...

Orwell’s 1984, but with LLMs

www.dn.se/kultur/johan...

Want better AF3 predictions for transmembrane domains? Give it some fatty acids to play with! This is *chef's kiss*

After 50 years, Jaws still shapes our view of sharks. @whysharksmatter.bsky.social spoke to Nature about how Jaws influenced the public perception of sharks and the importance of protecting marine life. 🎬 🌊 🧪

www.nature.com/articles/d41...

Shocking that RF2NA, which in my hands is shockingly & unusably mediocre, performs comparably to AF3 on RNA structure prediction, which I have never used for exclusively nucleotide modeling due to licensing restrictions

My great grandfather was born enslaved in Mississippi. That’s a fact. It’s unremarkable to me that my economic history colleagues, who love linking any and everything, neglect this fundamental fact when they talk about mobility, race, and everything else they sidestep in their so-called scholarship…

Physics-based design of efficient Kemp eliminases @lynnkamerlin.bsky.social www.nature.com/articles/s41...

What were they actually gonna do here? Ask every brown-enough person for their papers to go to the fucking baseball game? This is the most slam-dunk, anti-American thing I can think of. You need a passport to go to a Major League Baseball game now? Malpractice not to make a huge deal out of this.

I’m sharing a Palestinian account every day and today is Hayat. Hayat is 25 and was an engineer before this, her husband was a clothing merchant. They have lost everything. She has two children, Khaled who is 1 and a half and Fatima who is a newborn, both of these children were born during the war.

beyond parody -- Trump, through Karoline Leavitt, announces he'll make his decision about whether to strike Iran "within the next two weeks"

www.science.org/content/arti...

open.substack.com/pub/natesilv...

⚠️Global warming caused by humans is advancing at 0.27°C per decade – the highest rate since records began. This is one of the indicators updated every year by over 60 international scientists in the annual Indicators of Global Climate Change report – published today. doi.org/10.5194/essd... /1

Back from #EUPA2025 in a Saint Malo and am so impressed by the ECR talks, and so happy we gave them to opportunity to be on stage and shine ✨! Keep up the great work! You are the future of #proteomics… Also thanks to my excellent session co-chair @maurinefucito.bsky.social for making this fun!

@olafhartig.bsky.social och hans forskargrupp har en vision om att man ska kunna samla information som i dag ligger utspridd på webben inom en organisation. Det ska ske virtuellt, så att varje aktör behåller kontrollen över sin egen information #forskning #vetenskap tinyurl.com/z9ds5ku8

🧪 We're beta testing - and we want your thoughts! Try the redesigned PDBe entry pages & let us know: 🔸 What’s working? 🔸 What’s confusing? 🔸 What features do you miss? 💬 Feedback form: tinyurl.com/pdbe-beta-form #PDBeBeta #Bioinformatics #Biochemistry #Science #UserVoice

open.substack.com/pub/paulkrug...

Which RNAs are functional? Been a long time goal of @deboramarks.bsky.social to start an RNA sequence —> function and structure mapping. Huge thx to team for pushing on this when - led by Rohit Arora and Murphy Angelo for seeing this thru and Pascal Notin for pulling together!!!

RNA, RNA, RNA -> RNAGym! read all about it! biorxiv.org/content/10.110… Been a long time goal of @deboramarks.bsky.social We tried a million years ago, sciencedirect.com/science/articl��� Now total refresh led by Rohit Arora and Murphy Angelo and Pascal Notin for pulling together!!

I post my "Bluesky is dying" article on Twitter and sit back smugly as it's shown to 274 of my 80,000 followers, receiving two likes, on retweet, and an anime avatar called lolitas1488 telling me my inferior skullshape means I belong in the camps.

Adding fatty acids is indeed a great AF3 trick for many membrane proteins

www.nature.com/articles/d41...

www.nature.com/articles/d41...

www.nature.com/articles/d41...

www.nature.com/articles/s41...

meetings.embo.org/event/25-str... #EMBOStructuralBio

xkcd.com/3103/

If you are at PASC25 this year, go listen to Reto talk about his master thesis work on rescaling GCsnap2. It was awesome to have Reto with us last year and collaborate so close with the @cflorina.bsky.social and @dmi-hpc.bsky.social to make our tool even more useful!