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miguelib.bsky.social
🇲🇽 PhD. Candidate in Schapirolab at Uni Heidelberg. Deep leaning, computer vision, spatial omics and neighborhood analysis. Photography, sci-fi, music. Bachelor: @LCGUNAM masters: @UniBonn
5 posts 261 followers 126 following
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The latest version of the Kasumi manuscript is now published in Nature Comms www.nature.com/articles/s41... Kasumi identifies patterns in tissue patches, enabling analysis of disease progression and treatment response while providing insights into spatial coordination at cell-type or marker level

submitted 52 days ago • 1 comment

🚨 New preprint: Topography Aware Optimal Transport for Alignment of Spatial Omics Data We present our new alignment framework TOAST www.biorxiv.org/content/10.1...

submitted 67 days ago • 1 comment

1/ Ever wondered how to best quantify cell-cell neighbor preferences in tissues? We compared 9+ neighbor preference (NEP) methods for analysing spatial omics data and propose a novel approach that combines the most relevant analysis features which we call COZI 🔬✨ Read more: doi.org/10.1101/2025...

submitted 74 days ago • 1 comment

🧵 We are excited to share our new paper, showcasing micronuclAI, which leverages #AI and #ComputerVision to detect #chromosomal_instability #CIN #micronuclei Congratulations to @miguelib.bsky.social and Lindsay Caprio for leading this project.

submitted 113 days ago • 1 comment

Mind blowing science with 10x @10xgenomics.bsky.social #ESSB2024

submitted 198 days ago • 0 comments

Thank you @denisschapiro.bsky.social and @schapirolab.bsky.social!! Happy to be here!

submitted 200 days ago • 0 comments

@schapirolab.bsky.social mug #AdventCalendar courtesy of @margotch.bsky.social @chiaraschiller.bsky.social

submitted 204 days ago • 1 comment

We are looking for a Postdoc with a strong computational background to join our team. Want to work on the development and application of computational methods in the field of translational spatial biology? Apply now! karriere.klinikum.uni-heidelberg.de/index.php?ac...

submitted 206 days ago • 0 comments

submitted 311 days ago • 0 comments

📢 ¡Atención estudiantes de licenciatura! ¿Vives en un país en desarrollo ("low- and middle-income country) como México o muchos otros en Latinoamérica? ¡El premio Sanger está abierto! 👩🏽‍🔬🦠🧪🧫 Participa para ganar una #estancia de #investigación con #beca completa: www.sanger.ac.uk/about/the-sa...

submitted 220 days ago • 1 comment

This is a great demonstration for anyone who does visual data analysis. There are 12 black dots – but you'll have trouble seeing more than one or two at a time. The human visual system is not an especially reliable way to process images or extract features from out-of-the-ordinary visual fields. 🧪☀️

submitted 222 days ago • 13 comments

Interested in #singlecell and #spatial #metabolomics? Then book your calendar for December 10th! – Our online, free event will summarize major achievements of the field in 2024. #metabolism #omics #MALDI #EPFL With Giovanni D'Angelo and our #PhD students we prepared for you a fantastic lineup. 🧵 1/5

submitted 221 days ago • 2 comments

DeepCellTypes from Van Valen Lab, a new language-informed vision model, leverages the power of AI to accurately identify cell types in spatial proteomics data across diverse datasets and imaging platforms. 🧪https://www.biorxiv.org/content/10.1101/2024.11.02.621624v2.full.pdf+html

submitted 221 days ago • 0 comments

🧵 Bioinformatics faces a critical challenge: despite its importance, software quality often falls short due to the lack of proper development practices. In our latest paper, we advocate for improving software quality in bioinformatics through teamwork. academic.oup.com/bioinformati...

submitted 222 days ago • 4 comments

In this 2 min 📽️ I talk about "posts" from Starter Packs on #BlueSky that allow you to catch up with a subset of people you might be following. Aka feel free to follow as many accounts as you want without fear of missing posts from people you are interested in! 🙌🏽 #AcademicSky youtu.be/dYrMR8v4LCQ

submitted 227 days ago • 0 comments

What are the key disrupted multicellular processes in heart failure? In our new work we combine 23 years of molecular data with recent single-cell atlases to draw a cross-study patient map doi.org/10.1101/2024...

submitted 229 days ago • 0 comments

Explore disease at a multicellular level, capturing variations in patient samples across cell types, tissue features, studies, and technologies with Multicellular Factor Analysis, peer-reviewed by Review Commons and now published @elife.bsky.social elifesciences.org/articles/93161

submitted 582 days ago • 0 comments

Takeaway from the Challenges deep dive discussion during AI In(Sci)de Out conference. @EMBL. "Clusters don't make Class" by Alexandra Albu. Don't over interpret your UMAPs! #AcademicSky #MLSky

submitted 620 days ago • 0 comments

Congratulations @paubadiam.bsky.social!

submitted 621 days ago • 0 comments

Very happy to see that our review on gene regulatory networks is being featured by Nature Reviews Genetics and that it inspired its cover! 🥳 doi.org/10.1038/s415...

submitted 621 days ago • 0 comments