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ryanhisner.bsky.social
Teacher. Learner. Investigating mysteries of SARS-CoV-2 evolution.
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Unreal. Free speech is dead in the USA.

Sooo happy to finally have this one published!! (3 years in the making… 👀) A comprehensive investigation into the recency and geographical origins of both SARS-CoVs that spilled to humans in the past few decades, now in @cp-cell.bsky.social www.cell.com/cell/fulltex...

Public Service Announcement: Tyler Starr is on Bluesky @tylernstarr.bsky.social‬ Thought everyone in the Covid/virology space should know. I didn't realize this until it was pointed out to me by @flodebarre.bsky.social, even though I'd previously searched for him.

He doesn’t deal with individual grants himself. So ironic then that one of touch stone lies spun by COVID conspiracists and the MAGA faithful is that Tony Fauci *personally* paid off Kristian Andersen and Bob Garry for changing their minds on virus origins with a CREID grant.

Update: Unexpectedly, this 50-spike-mutation sequence has transmitted to at least 1 other person. Most Canadian seqs seems to be from nursing homes, so this may be confined to one facility—something we've seen before. But it proves this is transmissible & perhaps capable of spreading more widely.

Lots of recombinants these days, but it's rare to see one involving BA.1. But a BA.1.17/KP.3.1.1 recombinant showed up today. Clean breakpoint near the end of ORF1a. Has ~25 private AA mutations in the BA.1.17-inherited ORF1a—many classic chronic-infection mutations—but only a few elsewhere. 1/4

Amidst the discussion of measles reestablishment in the US, the risk of rubella provides an instructive example of long-term delayed consequences that could resonate for decades ... or be stopped by coming to our senses 1/

Incredible how quickly Yunlong Cao & co provide us w/info on the latest emerging SARS-CoV-2 variants. Already, we have great data on BA.3.2 (the divergent saltation lineage detected in South Africa & the Netherlands & NB.1.8.1, an emerging contender for global dominance. 1/9

Great paper exploring a key aspect of the vitally important SARS-CoV-2 nucleocapsid protein. I don't think most people realize that Delta really consisted of several major lineages. One came to dominate, and it was probably entirely due to the key N mutation discussed here.

Long-term cohabitation with pathogenic viruses: generally a bad thing, even when mostly dormant.