For tissues, I would trust 1D profiles if tissue is very sparse or has very large cells.
Note: lateral diffusion might happen during in-situ capture, but more important is the “diffuse background” that appears during prior steps. This actually drives most clustering artifacts.
Note: lateral diffusion might happen during in-situ capture, but more important is the “diffuse background” that appears during prior steps. This actually drives most clustering artifacts.
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I don’t share them bc I think the results were not super satisfactory. It is a completely open problem.