🚀 New Paper Alert! 🚀 𝐑𝟐𝐃𝐓: a comprehensive platform for visualising RNA secondary structure Check it out in @narjournal.bsky.social: academic.oup.com/nar/article/... Here’s why you should give it a try 🧵👇 - ThreadSky

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antonipetrov.bsky.social • 47 days ago

🚀 New Paper Alert! 🚀

𝐑𝟐𝐃𝐓: a comprehensive platform for visualising RNA secondary structure

Check it out in @narjournal.bsky.social:
https://academic.oup.com/nar/article/53/4/gkaf032/8005627

Here’s why you should give it a try 🧵👇

Comments

aandrzejewskaa.bsky.social•46 days ago

Congratulations! 🙂

antonipetrov.bsky.social•47 days ago

Originally designed to visualise standard RNA layouts like rRNA and tRNA, R2DT now supports 𝐚𝐧𝐲 𝐑𝐍𝐀 structure 🌍🔬

antonipetrov.bsky.social•47 days ago

R2DT can also visualise 𝐚𝐧𝐲 𝐝𝐚𝐭𝐚 overlaid on top of RNA structures. Think reactivities, conservation, SNPs, 3D distances, or anything else! 🧬✨

antonipetrov.bsky.social•47 days ago

The R2DT diagrams can be edited online using 𝐑𝐍𝐀-𝐬𝐩𝐞𝐜𝐢𝐟𝐢𝐜 editors and the tweaked layouts can be imported back into R2DT 🎨🔄

antonipetrov.bsky.social•47 days ago

🤖 Simply type, ‘Straighten nucleotides 123 to 135’ – RNAcanvas Code converts your commands to instructions using a custom ChatGPT ✨

antonipetrov.bsky.social•47 days ago

R2DT can be used on the web, through an API, in Jupyter notebooks, or locally with #Docker 🚀

Get started at https://r2dt.bio and reach out with any questions!
#RNA #Bioinformatics #dataviz

antonipetrov.bsky.social•47 days ago

Last but not least, a huge thanks to the amazing R2DT team! Shoutout to teams at @ebi.embl.org, @pdbeurope.bsky.social, @rnacentral.bsky.social, @rfamdb.bsky.social and many more for their great contributions! 🌟

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