Heck Yeah, I just searched over 300 timsTOF HT diaPASEF files with DIA-NN 2.0 on my cluster in under 2 hours. I'll try and make a video of how I did it tomorrow. It's not that terribly hard
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Yes …well soft of …it was against a proteome wide predicted library from it’s fasta , a rather large one that was predicted in advance which is what Diann 2 recommends these days I believe
I didn't monitor the jobs carefully, but I think i had approx 200 jobs running at once . At 20 cores per job that's 4,000 cores. Even with a old 10 year old+ cluster that's pretty fast. It's too bad they are decommissioning it. I hear it's all due to security issues maintaining such an old cluster.
It’s on our older HPC which has about 10k old cores . I’m using lssco https://hpc.ucdavis.edu/clusters which is about to be decommissioned because it’s pretty old …
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