My go-to package is TCGAbiolinks as it easily downloads the data and returns a SummarizedExperiment object together with the metadata information e.g., molecular subtypes from the TCGA marker paper.
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Action items:
1. go and download the data yourself
2. do exploratory data analysis (EDA)
3. what hypothesis can you test from the data and use it to answer
4. put your scripts and thought process in your github
Comments
1. go and download the data yourself
2. do exploratory data analysis (EDA)
3. what hypothesis can you test from the data and use it to answer
4. put your scripts and thought process in your github
Happy Learning.
Tommy
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