Looking for a review or just references to the most recent work on really recent demographic inference. Ie ways to infer population dynamics 1-50 generations in the past.
Comments
Log in with your Bluesky account to leave a comment
Just saw Guillaume Achaz talking at #PGG58 on Abdelmajid Omarjee's code using the SFS (might have been called "BlockBuster"???). But I think he listed you as a collaborator!
An important limitation is that the assumption of a single closed population. False signatures of bottlenecks can arise when this is violated. I have used IBDNe and GONE.
We are pretty certain that this assumption is not violated in our case - antelopes in the Gorongosa National Park - and in general the shorter the time window the more one can be confident of such things
Comments
HapNe: https://www.nature.com/articles/s41467-023-43522-6
IBDNe: https://www.cell.com/ajhg/fulltext/S0002-9297(15)00288-8
GONE: https://doi.org/10.1093/molbev/msaa169
recent review: https://www.nature.com/articles/s41467-023-43522-6