To achieve these improvements, we finetune SAM on a large LM dataset (ca. 50k images, 1.2M annotated cells) and on a large EM dataset (ca. 5k images, 90k annotated nuclei and mitos). We also add a new decoder for instance segmentation, which provides efficient automatic segmentation.
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You can find all the details at https://github.com/computational-cell-analytics/micro-sam
Also thanks to @ritastrack.bsky.social for the excellent handling of our paper.
Stay tuned for more updates on micro_sam in the next few days!