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artemmoskalev.bsky.social
Re-imagining drug discovery with AI 🧬. Deep Learning ⚭ Geometry. Previously PhD at the University of Amsterdam. https://amoskalev.github.io/
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AI/ML Internships in Drug Discovery🚨 Our team is hiring PhD research interns for summer 2025 in the US. Come work with us on cutting-edge drug discovery projects! We have 3 openings:

submitted 20 days ago • 1 comment

Accepted to ICLR 🚨 Does using more geometry always help with molecule property prediction? In practice, we deal with imperfect geometries, which introduce structural noise. In our work arxiv.org/abs/2410.11933, we investigate when and how geometric information is useful (or not) for RNA molecules.

submitted 24 days ago • 1 comment

Accepted to ICLR 🚨 Don't treat the language of biology as natural language! Biology speaks in hierarchical patterns that natural language models don't fully capture. Meet HELM: a method to align your bio-Language Model with the intrinsic structure of mRNA sequences. arxiv.org/abs/2410.12459 1/5

submitted 35 days ago • 1 comment

Inventors of flow matching have released a comprehensive guide going over the math & code of flow matching! Also covers variants like non-Euclidean & discrete flow matching. A PyTorch library is also released with this guide! This looks like a very good read! 🔥 arxiv: arxiv.org/abs/2412.06264

submitted 79 days ago • 1 comment

Three BioML starter packs now! Pack 1: go.bsky.app/2VWBcCd Pack 2: go.bsky.app/Bw84Hmc Pack 3: go.bsky.app/NAKYUok DM if you want to be included (or nominate people who should be!)

submitted 86 days ago • 15 comments

Scientific machine learning starter pack go.bsky.app/9a1GVeq

submitted 93 days ago • 18 comments

Finally!

submitted 97 days ago • 0 comments

A starter pack for researchers interested in Geometric Deep Learning - in the broadest sense possible! Let me know if you would like to be listed. :) Thanks @sharvaree.bsky.social for the idea! go.bsky.app/7h8sek

submitted 98 days ago • 34 comments

My Simons talk on all the next-token & multi-token prediction stuff I've been yapping about is up, if anyone wants to watch! There're better versions of the talk that Gregor co-presented with me elsewhere, but sadly not recorded. He is an amazing presenter! www.youtube.com/watch?v=9V0b...

submitted 98 days ago • 4 comments

Thrilled to announce Boltz-1, the first open-source and commercially available model to achieve AlphaFold3-level accuracy on biomolecular structure prediction! An exciting collaboration with Jeremy, Saro, and an amazing team at MIT and Genesis Therapeutics. A thread!

submitted 101 days ago • 18 comments

Why so many reviewers tend to prefer complexity over simplicity in design?

submitted 99 days ago • 0 comments

Yesterday, @erikjbekkers.bsky.social presented his vision on equivariance to IvI (at UvA), showcasing recent work on geometry-grounded representation learning - addressing fundamental limitations in geometric reasoning of current AI systems. 🤖 Exciting times ahead for geometric deep learning! 🌐 🤩

submitted 99 days ago • 1 comment

What would be a good way of getting better in jax as an experienced pytorch user? 🤓

submitted 99 days ago • 1 comment