atulbutte.bsky.social - Profile | ThreadSky | a Reddit-style client for Bluesky

Go look at our #data Free and #FAIRsharing. 144 studies, 10,244 human participants and > 135,000 samples. #systems #immunology @immportdb.bsky.social #IDsky #immunesky Check our #analysis tools at immunespace.org immport.org/resources/hipc

submitted 7 days ago • 0 comments

Yeah! All 10 campuses of the @UofCalifornia are now considered R1 research institutions!

submitted 15 days ago • 0 comments

Great new article showcasing how researchers across @UofCAHealth are using @UofCalifornia Health Data Warehouse to study endometriosis, glaucoma, rare disease, cirrhosis, and more! Includes the work of @ManishButte @msirota84 @DrJonWatanabe and many others! bit.ly/4h5lmrh

submitted 37 days ago • 0 comments

So awesome! “Daily ferry service is sailing toward Mission Bay.” Imagine commuting directly to @UCSF Mission Bay via high-speed zero-emissions boat! Scheduled to begin service in 2027. Now all we need is service to the South Bay! 😊 www.ucsf.edu/news/2025/01...

submitted 46 days ago • 1 comment

Use my starter pack to add about 90 accounts to follow in science, #AI, bioinformatics, and clinical informatics! go.bsky.app/97wmgsZ

submitted 48 days ago • 1 comment

Thinking of and praying for my friends, family, and colleagues in and around Santa Monica and @UCLA @UCLAHealth during these terrible fires…

submitted 53 days ago • 0 comments

Whoa!! @HHSGov drops 125 page HIPAA update for comments: "update[s] HIPAA Security Rule for the first time since 2013"! www.hhs.gov/hipaa/for-pr...

submitted 54 days ago • 0 comments

Join us for Post-Doctoral projects at @atulbutte.bsky.social on a newly funded FDA project on real-world analysis of onco-therapies! If you have a passion for epidemiology, causal inference, LLMs & scientific rigor, we'd love to hear from you. Please DM me. Spread the word. Thank you.

submitted 56 days ago • 0 comments

I often wish the default iPad on screen keyboard had arrow keys to navigate in text…

submitted 60 days ago • 1 comment

2024 saw another record for bioRxiv postings. Thanks to all the CSHL staff, affiliates, authors, funders, and everyone who advocates for the project. Happy New Year and #letsmakethisthenorm ! 🧪

submitted 61 days ago • 7 comments

I have a colleague (not on social media) who likes to say that works don't fall into the public domain, they ascend into the public domain. I really love that.

submitted 61 days ago • 30 comments

This ad seemed so hard to believe back in 1999… "all rooms have every movie ever made in any language anytime, day or night."

submitted 69 days ago • 0 comments

Whoa! In @NEJM_AI: A Multimodal Biomedical Foundation Model Trained from 15 Million Image–Text Pairs… fully open-access foundation model! ai.nejm.org/doi/full/10....

submitted 69 days ago • 0 comments

Folks moving back to California! “California nets large population increase in 2024 — nearly returning to pre-pandemic level” https://buff.ly/4fxlMVs

submitted 71 days ago • 0 comments

A great job for someone, for certain. But I am re-posting this because this photo of the Geisel (of Dr. Seuss fame) Library at UC San Diego is a reminder of the twinned seriousness and surreality of my undergraduate education there--and the (re)imagining and (re)visioning it made possible for me.

submitted 72 days ago • 0 comments

Great! @UCSD Biomedical Informatics is recruiting new tenure-track faculty! Assistant Professor https://buff.ly/49LX6rf ; Associate or Full Professor

submitted 72 days ago • 0 comments

Nearly 50 US #AI startups raised $100M+ in 2024!

submitted 72 days ago • 0 comments

$1 million dollars up for grabs from @NIH for the teams that come up with the best measures of research data sharing, also known as a Data Sharing Index (S-index)! www.freelancer.com/contest/nih-... HT @michaelfchiang.bsky.social

submitted 73 days ago • 2 comments

“When a measure becomes a target, it ceases to be a good measure." - Goodhart’s Law en.m.wikipedia.org/wiki/Goodhar...

submitted 73 days ago • 0 comments

Here's a website that describes the NIH "s-index challenge" to promote data sharing by developing a robust metric to identify exemplary data sharers. National Eye Institute is excited lead a large group of participating NIH institutes (shown on website). www.freelancer.com/contest/NIH-...

submitted 73 days ago • 1 comment

There’s a lot to unpack in the Bipartisan House Task Force Report on AI. It’s clear that progress will require collaboration to ensure a healthy evaluation/adoption pipeline. Glad to see @ucsdhealth.bsky.social’s work in sepsis AI highlighted in this report. Link: www.speaker.gov/wp-content/u...

submitted 75 days ago • 1 comment

After nearly 15 years since its publication, #MANTRA (the tool for drug repositioning I designed during my PhD in Diego di Bernardo's lab at TIGEM) still goes strong! @atulbutte.bsky.social and colleagues using it for drug repurposing in skin inflammation here 👇 👍 www.science.org/doi/10.1126/...

submitted 77 days ago • 1 comment

Woah! New Microsoft python packages convert from Office documents into Markdown! github.com/microsoft/ma...

submitted 77 days ago • 3 comments

Excited to share our latest paper evaluating large language models in assessing oncology radiology reports. Led by superstars Travis Zack and CPH student Li-Cheng Chen! @atulbutte.bsky.social Annotated reports included @ucsf-bcshi.bsky.social @ucsfcancer.bsky.social ascopubs.org/doi/10.1200/...

submitted 81 days ago • 0 comments

Very cool! One genomic test can diagnose nearly any infection! Comes out of the lab of Charles Chiu @ucsfhealth.bsky.social www.ucsf.edu/news/2024/11...

submitted 86 days ago • 0 comments

Whoa… @Snowflake expanding into Menlo Park? "The 773,000 square feet that Snowflake subleased from @Meta is enough office space for 3,000 to 3,800 workers." https://buff.ly/3CSJq15

submitted 87 days ago • 0 comments

The nerd in me loves this! Nearly 400 logos in this Space Exploration Logo Archive… https://buff.ly/3ZA8qmP

submitted 88 days ago • 1 comment

Whoa! @Amazon to invest an additional $4 billion in AI startup @Anthropic!

submitted 88 days ago • 0 comments

Tens of thousands of sounds and sound effects freely available for your creations, courtesy of the @BBC! sound-effects.bbcrewind.co.uk

submitted 89 days ago • 0 comments

WOW! @UCLAHealth hiring Associate Dean for Health AI Innovation & Strategy and Director, @UCLA Center for AI & Smart Health! Tenure-track and non- options available. Opportunity to shape and drive #AI vision and strategy. Apply soon! recruit.apo.ucla.edu/JPF10032

submitted 89 days ago • 0 comments

Great! Passing 100 publications reusing data sets from @ImmPortDB!

submitted 97 days ago • 0 comments

🎨 In case anyone need… The NIH BioArt Source is an awesome library of free professionally drawn illustrations for scientific presentations or figures. Downloadable in HD. Thank you NIH for this invaluable tool 🙏! Check it out 👇 bioart.niaid.nih.gov

submitted 100 days ago • 45 comments

Duke is hiring #Informatics faculty! 2 positions- Clinical Research Informatics (data harmonization, linkage, etc.) and Collaborative #AI. academicjobsonline.org/ajo/jobs/29227 #jobs #faculty #academia

submitted 102 days ago • 1 comment

So thrilled (and surprised) to be featured in 2024 UCSF State of the University, highlighting the Baker Computational Health Sciences Institute @ucsf-bchsi.bksky.social helping “to create a world that is safe regardless of race, ethnicity, social determinants of health.” www.ucsf.edu/state-univer...

submitted 101 days ago • 2 comments

Presenting today from my lab at 8:30 AM in #AMIA2023 Grand Ballroom D: @Harry_S_Sun on DeepHeme: A generalizable, bone marrow classifier with hematopathologist level performance #deeplearning #AI

submitted 475 days ago • 0 comments

Whoa… Microsoft Needs So Much Power to Train AI That It's Considering Small Nuclear Reactors! (via slashdot) buff.ly/3PYi6CE

submitted 518 days ago • 0 comments

The strike by the Writers Guild of America has ended. Here’s how they negotiated for protection against #AI… (via Engadget) t.co/U7TMdUrePR

submitted 518 days ago • 0 comments

Finally available in California! Sign up to join the pilot California’s mobile driver’s license / ID card is a “free, secure, and convenient digital ID”, supposedly works at SFO and LAX. Doesn’t (yet?) work with Apple Wallet like other states… https://www.dmv.ca.gov/portal/ca-dmv-wallet/

submitted 559 days ago • 0 comments

SO great to see MakerFaire back in the Bay Area once again! Our kiddo got some much out of these every year, seeing adults so happy with their work, their creations, and their jobs! https://makerfaire.com/bay-area/?mc_cid=99e76625ca&mc_eid=c6069bfcc8

submitted 577 days ago • 0 comments

So great to see the new NIAID Data Ecosystem Discovery Portal, enabling researchers to find infectious and immune-mediated disease #opendata sets, including those from ImmPort! https://data.niaid.nih.gov/

submitted 577 days ago • 0 comments