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bacterioskeptic.bsky.social
Assistant Professor in Microbial Genomics (#microbiome, #pneumococci, #haemophilus). My views not UoB. Husband, dad, music miserablist and egg chasing.
41 posts 277 followers 247 following
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Fantasitic to see achievements of the brilliant Tash Theodosiou (not on here I think) from @unisouthampton.bsky.social finally in print! With @adamdale.bsky.social @dbogaert.bsky.social Prof. Rob Read, Prof. Chrissie Jones et al. Was a pleasure to be involved! www.sciencedirect.com/science/arti...

submitted 2 days ago • 1 comment

My youngest son has decided he now supports Ireland … can’t say I blame him

submitted 17 days ago • 0 comments

New paper in @microbiologysociety.org Microbial Genomics Journal with collaborators in Malaysia examing 10 years of #Acinetobacter baumannii in a tertiary healthcare center www.microbiologyresearch.org/content/jour...

submitted 21 days ago • 1 comment

I’m not sure this is going to be Scotland’s first championship year #SCOvITA

submitted 25 days ago • 0 comments

New paper out today from the lab on Akkermansia muciniphila 🦠and how it breaks down host glycans! Very proud of my group, especially @cassiebakshani.bsky.social who did an amazing job. @naturemicrobiol.bsky.social www.nature.com/articles/s41...

submitted 26 days ago • 3 comments

Our mSCAPE project has been formally announced to the world by @smhopkins.bsky.social at #FOG2025 today: www.gov.uk/government/n... - a really exciting academic-public health collaboration to build a surveillance platform leveraging NHS metagenomic diagnostic data. @meerac.bsky.social

submitted 27 days ago • 4 comments

This will probably generate some backlash since there are important environmental, commensal, and pathogenic species in each group, but Gram-positive bacteria are just more talented, rather more charismatic, and simply better looking than Gram-negative bacteria

submitted 34 days ago • 8 comments

Happy blue monday everyone

submitted 37 days ago • 0 comments

I’m at my desk … now what?

submitted 51 days ago • 3 comments

Useful minireview outlining how little we really know about commensals in the context of microbiomes and disease journals.asm.org/doi/10.1128/...

submitted 69 days ago • 0 comments

Looks useful www.sciencedirect.com/science/arti...

submitted 71 days ago • 0 comments

I quite like pneumococci being referred to as 'professional pathogens'. There's a lot to agree with in here ... www.thelancet.com/journals/lan...

submitted 71 days ago • 0 comments

Requires a change in assessment rather than tools to try and detect AI use. That genie isn’t going back in the bottle! www.theguardian.com/technology/2...

submitted 73 days ago • 0 comments

What are Friday evenings for if not dressing your dog up as an elf.

submitted 75 days ago • 1 comment

Bit of rugby … don’t mind if I do

submitted 94 days ago • 0 comments

Yesterday in the cocktail bar of the Burgh Island Hotel I met a very spry gentleman of 90 having a martini. I asked him the secret of his spryness. His advice was: 1. Don't eat too much 2. Do drink too much 3. Never wear jeans

submitted 98 days ago • 24 comments

I have three PhD studentships available currently through the MIBTP DTP warwick.ac.uk/fac/cross_fa... on different aspects of the respiratory microbiome, interaction with mucin with @lucyicm.bsky.social, the resistome with Dr Michelle Buckner and pathobionts with @bacterioskeptic.bsky.social

submitted 100 days ago • 1 comment

I have a funded PhD opportunity through MIBTP to look at pneumococci in adults with Dr Mike Cox (also check out two other projects with Mike and Prof. Joan Geoghegan on other respiratory pathobionts) link here: warwick.ac.uk/fac/cross_fa... Happy to be contacted with questions. Reposts appreciated 👍

submitted 100 days ago • 0 comments

Majestic puppy

submitted 101 days ago • 0 comments

Got to hand it the boks, a win even when playing below usual standard

submitted 102 days ago • 0 comments

We just released 8 new data wrangling tutorials for biologists! sandbox.bio/community/da... 💻 🧬

submitted 103 days ago • 2 comments

MIBTP PhD applications are now open! There are three associated with my lab.1) infant gut microbes and human milk oligosaccharides with @halllab.bsky.social 2) respiratory microbiome nutrition with Mike Cox 3) mucus-producing organoids with Amanda Rossiter! 🧪✨ warwick.ac.uk/fac/cross_fa...

submitted 103 days ago • 0 comments

PhD studentship alert!! Two projects available with me fully funded by BBSRC This one is a collaboration with Dr Michelle Buckner warwick.ac.uk/fac/cross_fa... And this one a collaboration with @overtonlab.bsky.social warwick.ac.uk/fac/cross_fa... Both will be lots of fun! Come & join us 😃

submitted 103 days ago • 2 comments

Our latest work is out in preprint in Access Microbiology www.microbiologyresearch.org/content/jour...

submitted 192 days ago • 1 comment

'Tis the season ... of UK research fellowship interviews! Here are some tips & tricks to help you prepare - featuring a list of 100(!) common Q&A questions elisagranato.com/how-to-apply...

submitted 104 days ago • 0 comments

For a bit of nostalgia from the other place … how long before we start calculating our Kardashian index

submitted 104 days ago • 1 comment

Darwinian Christmas

submitted 461 days ago • 26 comments

To celebrate the 125th anniversary of the University of Birmingham, we are recruiting 100 Anniversary Fellows and 25 Anniversary Chairs fellowsandchairs.birmingham.ac.uk If you are interested to join our community of researchers in infection, inflammation and immunology, please DM me!

submitted 105 days ago • 2 comments

JOB CLAXON! I am recruiting a post-doctoral researcher on a BBSRC-funded project (36 months) on the genetics and functional genomics of vancomycin resistance in enterococci. Further details here: edzz.fa.em3.oraclecloud.com/hcmUI/Candid... Please DM or email me if you want to discuss this post.

submitted 106 days ago • 0 comments

On my way to Cambridge to the Microbiomes in Health and Disease conference. Mostly to plug the newly launched section in MGen of Metagenomics and Microbiomes microbiologysociety.org/news/full-ne...

submitted 378 days ago • 2 comments

New personal view article in The Lancet Microbe Integrating research on bacterial pathogens and commensals to fight infections—an ecological perspective www.thelancet.com/journals/lan... #MicroSky #IDSky #OpenAccess #OA

submitted 322 days ago • 1 comment

I'm new here, so I'll share our recent work here too 😁🧫 Using Tn-seq + live imaging in engineered airway organoids, we explored the fitness tradeoffs P. aeruginosa faces while growing and surviving antibiotic treatment on the mucosal surface. Check it out: www.nature.com/articles/s41... #MicroSky

submitted 107 days ago • 2 comments

Should have stayed asleep

submitted 113 days ago • 1 comment

Please sign up, it will be fun! Open for all with an interest in AMR and genomics (in the UK and elsewhere). www.targetamr.org.uk (and please give @target-amr.bsky.social a follow!)

submitted 119 days ago • 5 comments

Ok, I'm handling a paper as an editor and I've hit 20 invites without luck. Anyone on here interested in reviewing an epi paper comparing COVID-19 and Flu ... please!

submitted 135 days ago • 0 comments

It's happening again! The next Analysing Microbial Genomic Data course (#AMGD25) in bioinformatically brilliant Birmingham is available - 5 days, hands-on, 17th March 25, beginners welcome www.birmingham.ac.uk/postgraduate...

submitted 141 days ago • 1 comment

Sunday morning jeopardy. Will she, won’t she?

submitted 143 days ago • 0 comments

New paper out in BMC Public Health on the MY-Pneumo study protocol - pneumococcal infections among children with pneumonia in Peninsular Malaysia bmcpublichealth.biomedcentral.com/articles/10....

submitted 182 days ago • 1 comment

Evolutionary dynamics of genome structure and content among closely related bacteria www.biorxiv.org/content/10.1... Interesting paper looking at bacterial evolution over ~100 years - in E. coli ST131. 1 structural change per 3 core genome SNPs.

submitted 228 days ago • 1 comment

New paper from me and lots of fantastic colleagues - Did COVID-19 lockdowns change carriage of other respiratory tract bacteria in children? Sort of. journals.asm.org/doi/10.1128/...

submitted 229 days ago • 0 comments