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florianjug.bsky.social
Computer scientist on a life-science mission. Working on pushing bioimage analysis, computer vision, AI/ML methods for the life sciences. Love running and pottery.
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🚨 Fantastic opportunity to conduct a PhD in Europe! European funding and fantastic international community! 👩‍🎓

“Join the Pigino Lab! We’re hiring a PhD student to explore primary cilia biology using advanced imaging, spatial ‘omics, and AI. Apply now at www.cilia-ai.eu and be part of the Cilia-AI Doctoral Network!”

⏰ 23 days left ⏰ Apply! Make your college apply! Repost to help us find our future colleagues group leaders!!! 🙏 Thanks a ton! 🙏

‼️🔬 We start!!! 🎉🤖 Super exciting!!! After years of teaching courses for #DeepLearning for Microscopy and Life Science application, we start today our first “advanced course” @embl.org! #EMBLDeepLearning

Status: Thinking of how I can be of service to all the peeps at NIH and NSF who have had their lives turned upside down this week. For those companies and institutions around the world looking for talent, this is an opportunity for you and them. Will look for matchmaking opportunities.

Coming back to Milan after an exciting #AAASmtg… layover in Zurich. Texting @gaiapigino.bsky.social , my wife, who I know is leaving for San Francisco. Turns out she was only a few steps away. 🥜 😆 Quick kiss, and hop in our respective ✈️s! #scientistlife

Important! Let’s make this happen, please!!! 🙏 👍

🔬 Are you looking to work in an imaging core facility? 🔬 Permanent Staff Scientist position at the UEF Cell and Tissue Imaging Unit at the School of Medicine, Institute of Biomedicine in Kuopio, Finland. uef.varbi.com/en/what:job/...

It’s starting. It looks like a regular, well organized and rather large meeting… but… there is tension in the air… (for obvious reasons) 🇺🇸 #AAASmtg

Arrived at #AAASmtg in Boston today. Preparing for a very interesting sessions “An Internet of Cell Images Available to Everyone”. Fantastic organizers, excited to be on the panel with @drannecarpenter.bsky.social and Stephanie Otte (CZI). 👀👇❗️

🔬🎤 As pre-announced a few days ago... please let us proudly present to you: 𝑴𝒊𝒄𝒓𝒐𝕊𝒑𝒍𝒊𝒕 - your ticket to imaging more, imaging more gentle, and/or imaging more efficient. 🔬 doi.org/10.1101/2025... Like ❤️, repost 🔂, and most importantly... please send feedback ✉️ our way! 🙏

📝 FeatureForest: the power of foundation models, the usability of random forests. Nomen est omen! We use features of the biggest models and train a handy random forest based pixel classifier with them. 👍 Hit bioRxiv recently… check it out! www.biorxiv.org/content/10.1...

Immagine you could image two cellular structures in the same fluorescent channel and still reliably get them separated afterwards… What would you do with this? Now… what would you do if that also worked with 4 structures at once? 👇 #MicroSplit #preview🧵

Together with Christian Tischer, 3D rendering of multi-res microscopy data was added to MoBIE FIJI plugin using #BigVolumeViewer. Check any remote datasets (like @dudinlab.bsky.social maps of protists using ExM) in the highest quality. For full details read forum.image.sc/t/mobie-plus...

📢 Submissions are now open for the CellMap Segmentation Challenge. Build the best method for segmenting cellular organelles in vEM using our 289 annotated volumes, 40 organelle classes, and 22 diverse cell and tissue types. 🔗 hhmi.news/410evJQ

Sometimes I wonder why I check Threads. I just don’t have a network there and 🦋 is really more than enough social media… but then… do I wanna miss his refreshing takes, stabs, and comments?!? @yann-lecun.bsky.social

QI Alumni: QI wants to follow you! Post below or follow @qiatcshl.bsky.social & we'll follow you back! 😺 🔬 💻 📊

🚨🚨 MEGA JOB ALERT 🚨🚨 Independent Group Leader Positions in Computational Biology @humantechnopole.bsky.social! Are you ready to start your own lab? Do you know someone who is? Repost this + share with everyone who might want to know about it. Thanks!!! 🙏 More details below... check it out! 🧵 1/3

🚨 Save the Date! 🚨 AI4Life & @globias.bsky.social are hosting a 4-part webinar series to showcase AI4Life services and lessons learned. 📅 When: Feb 13, Apr 10, Jun 12, Aug 14 🖥️ How: Online | 🎥 Recorded 🔗 Registration: bit.ly/registration...

Amazing talk on protein design by Martin Pacesa @martinpacesa.bsky.social from EPFL (Correira Lab). Thanks, that was educational and good fun!!! 🤩 @humantechnopole.bsky.social

Which EU based entity could host open source AI models (eg. the currently hot DeepSeek models) and serve it to the general population? Would you switch to such a service if it existed? Spoiler: I would! 👍

Interesting. On multiple levels… youtu.be/V-Fla5hxMRg?...

After the successful Light My Cells challenge, the next @france-bioimaging.bsky.social challenge, Fuse My Cells, aims to predict a fused 3D image from only 1 or 2 available 3D views. Registration is open & the training database will be released on 31 Jan! focalplane.biologists.com/2025/01/13/f...

Applications for our Quantitative Imaging: From Acquisition to Analysis 2025 course (Mar 24-Apr 8) are due on Jan 31! Come immerse yourself in microscopy and image analysis with me, @talleylambert.bsky.social, @bethcimini.bsky.social, @florianjug.bsky.social & Hunter Elliott! Please RT

Excited to share that IBDM (Institut de Biologie du Développement de Marseille) is expanding its research groups this year! A great place for developmental biology and interdisciplinary research located on the beautiful Marseille-Luminy campus! Deadline for applications: March 30th, 2025