joshmoore.bsky.social - Profile | ThreadSky | a Reddit-style client for Bluesky

Join us @e-science-tage.de from March 12-14! We are excited to offer a workshop on #FAIR microscopy data management, specifically for non-bioimaging experts. Meet us for 3 days of discussing "Challenges in a Changing World" in RDM. Looking forward to the event. 👉 e-science-tage.de

submitted 1 day ago • 0 comments

Public comments are open for gender marker changes for trans people on passports. DS-11 Application for passport: www.federalregister.gov/documents/20... DS-82 Passport Renewal: www.federalregister.gov/documents/20... DS-5504 Name Change and Corrections. www.federalregister.gov/documents/20...

submitted 8 days ago • 22 comments

Look at all of those #OMEZarrs! 🤩

submitted 7 days ago • 0 comments

Have you ever waited a long time for @xarray.bsky.social to open up a large @zarr.dev dataset in cloud storage? Upgrade to Zarr 3 for a massive performance improvement! 🚀

submitted 7 days ago • 0 comments

We are excited to announce the second virtual BioImage Archive User Forum. Join us to learn about our latest developments and future plans (including our brand new website!). 10th March 2025 at 9:00-10:30 UTC or 14:00-15:30 UTC Register: forms.gle/MFmCWfPm9Upn... Agenda: tinyurl.com/biaagenda

submitted 8 days ago • 1 comment

Very happy to announce our winter release of syGlass: 2.2.0! Now control syGlass with your voice. We've also upgraded the auto-segmentation, mask handling & proofreading, and the narration system. We've added basic support for @zarr.dev. Check out the changelog: www.syglass.io/blog/announc...

submitted 44 days ago • 0 comments

Next week I'll be giving a webinar on one of my favorite parts of Icechunk--the ability to apply git-style version control to Zarr arrays and Groups. This capability makes data workflows so more safe, robust, and reproducible. Come check it out! (Registration link below.)

submitted 13 days ago • 0 comments

Archive Request xkcd.com/3052

submitted 10 days ago • 124 comments

Based on the feedback of #elmi2024 there will be a follow-up session for COMMUNITY TOOLS during the Core Facility Day at #elmi2025 in Heidelberg. Submit your community tools to MicroscopyDB via elmi.embl.org/tools/ for the chance to be selected to present it.

submitted 16 days ago • 1 comment

📢 TiM2025 Workshop Schedule is Live! The full schedule for our #TiM2025 workshops, including dates and times, is now available on our event website! ▶️ bit.ly/3BPN9fB 🔜 Registration opens in early March. Stay tuned!

submitted 16 days ago • 0 comments

Are you a @gerbi-gmb.de member? Need help to join us at #OME2025 at the end of April? Get in touch! www.bioimagingnorthamerica.org/events/ome-2...

submitted 18 days ago • 0 comments

Wonderful to have the perspectives of the international repositories as we drive toward the standardization of (large) bioimaging data! We're closer than ever to having petabytes of analysis-ready cloud-optimized images for all! 🦾 @openmicroscopy.org @zarr.dev 🚀

submitted 23 days ago • 0 comments

And now, support for Zarr v3 & sharding is released as an OME-Zarr specification! 🎉 forum.image.sc/t/ngff-0-5-r... #NGFF #BioImaging #Formats @openmicroscopy.org @zarr.dev

submitted 30 days ago • 0 comments

🐘2🦋 fediscience.org/@c4r510@mast... The esteemable Carsten Fortmann-Grote has linked metadata in the #ELN #OpenBIS with metadata in the #bioimage resource #OMERO answering: "How many images are present in omero for a given sample in OpenBIS? 🤔" #LinkedOpenData #FAIR

submitted 42 days ago • 1 comment

Ack! More travel options 🙈🙉

submitted 42 days ago • 0 comments

🤩 If you haven’t seen @grosoane.bsky.social ‘s work on @blender3d.bsky.social ing @zarr.dev s, …. Well, then you should be following @grosoane.bsky.social ! 😛

submitted 42 days ago • 0 comments

🚀 Applications for a Software Developer position at GerBI close on 31st January. Don’t miss out & apply now!

submitted 49 days ago • 0 comments

😍 That's what friends are for!! #opensource #scientific #python #ftw 💪

submitted 49 days ago • 0 comments

🎉 Zarr-Python 3 is here! 🎉 - Full support for Zarr v3 spec - Chunk-sharding for more efficient data storage - Major performance boosts with async I/O & parallel compression 💻 pip install --upgrade zarr 💻 conda install --channel conda-forge zarr Blog post: https://buff.ly/3C3OwYw

submitted 49 days ago • 2 comments

Hi, Zarr community! 👋 🚨 Big news: Zarr-Python 3.0 is dropping next week! 🚨 If your project depends on Zarr-Python, make sure to check out the migration guide to get ready for the update. Guide: https://buff.ly/3W0cLxd More updates soon! 🧑🏻‍💻

submitted 54 days ago • 0 comments

"The study is impressive in its scale...cases and deaths dropped by more than 50% and in the Indigenous population the drop was even more dramatic: more than 60%." Nature Medicine study shows the effects of Bolsa Familia strongest in Black and Indigenous populations www.npr.org/sections/goa...

submitted 55 days ago • 12 comments

NIH launches initiative to double check biomedical studies @science.org

submitted 56 days ago • 0 comments

As 2024 wraps up, we’ve gathered all our past events on one page! Check them out here: bit.ly/4iH8OHE🎉 Looking ahead, we’re excited for more events in 2025! Happy holidays & a fantastic new year to all. Excited for another year of amazing events & community engagement🌟

submitted 66 days ago • 0 comments

First time that my cartoons are printed on postcards! Have a look 👇

submitted 69 days ago • 0 comments

🚨 Save the Date: General Assembly 2025! 🚨 📅 April 2nd | 13:30-17:30 | Online Join us as we share key outcomes from the board meeting & plans for the year ahead (exclusively for members). More info & regular updates: bit.ly/3DobUjG

submitted 70 days ago • 0 comments

Software engineer or bioinformatician? 3 positions via Bastion Technologies, Rothe Enterprises, @bluemarblespace.bsky.social working for NASA Open Science Data Repository/GeneLab 🔗 bastiontechnologies.applicantpro.com/jobs/3589766 🔗 rothe-enterprises.com/careers/ 🔗 easyapply.co/m/apply/0347...

submitted 72 days ago • 0 comments

🚨 Friendly reminder: The deadline to apply for one of the 20 extra academic spots at #TiM2025 is tomorrow, December 19th! 👉 Submit your application here: bit.ly/3ZifMv9

submitted 71 days ago • 0 comments

🚀My rework of the annotation scripts is now officially part of OMERO.scripts 🚀 github.com/ome/omero-sc... Follow the guide to get started with them: omero-guides.readthedocs.io/en/latest/sc... Many thanks to @will-j-moore.bsky.social @openmicroscopy.org and all the Beta Testers.

submitted 72 days ago • 0 comments

Know someone looking for a new start in 2025? 🔍 Colleagues of #BlueSci, help flex this new social muscle! 🦾

submitted 76 days ago • 0 comments

The 3rd #de.NBI #BioHackathon Germany has come to an end. The project proposed by S. Kunis & @joshmoore.bsky.social on "Increasing interoperability of bioimage dataset resources" has come to an end. Many thanks to organizers & to participants who joined online & on-site. Metrics highlighted: 👏

submitted 76 days ago • 0 comments

OMERO.figure 7.2.0 just released with lots of new features, including "live" interactive inset panels, panel borders, HiLo checkbox, panel flipping, ROI Fill-Colour, ROI Points... Full list at github.com/ome/omero-fi... Thanks to @tom-bssnnt.bsky.social, Rémy Dornier, Tehmina Enayat & Jens Wendt!

submitted 76 days ago • 3 comments

Calling all #Microscopists! Please complete the 2024 #ImageAnalysis Community Survey to inform us about your training needs! Particularly interested in hearing from people outside Europe/North America or anyone who does not consider themselves "computational"! forum.image.sc/t/2024-image...

submitted 79 days ago • 0 comments

Please help the #Zarr community welcome @normanrz.bsky.social as the newest member of the Steering Council! 👏🏼 zarr.dev/blog/steerin...

submitted 79 days ago • 0 comments

Increasing interoperability of bioimage dataset resources is the main goal of @nfdi4bioimage.bsky.social's project at the 3rd #de.NBI #BioHackathon in Kassel - already in full swing. A great opportunity to develop ideas and solutions #RDF #IDR #OMERO #RO-crate and lots of fun hacking for FAIR data.

submitted 79 days ago • 0 comments

See the things you miss if you’re not on #BlueSci… #Galaxy 🤝 #OMERO

submitted 83 days ago • 0 comments

One of my favourite data discoveries this year: Google's mind-blowing ARCO-ERA5 dataset: hourly data for ~300 climate variables, available globally from 1940! 🤯 Loadable with a single line of Python code from a single cloud-friendly Zarr file! Below: a month of wind waves + swell: 🌊

submitted 93 days ago • 35 comments

Hello, world! 👋 For folks who don't know me: I am a recovering behavioral x computational scientist who spent 15 years or so working on initiatives to accelerate the adoption of open practices in science. This STAT piece is a good summary of some of our recent work (thanks @joshmoore.bsky.social!)

submitted 85 days ago • 2 comments

"Scientists collaborate — funders must, too" @dartar.bsky.social & @k8hert.bsky.social www.statnews.com/sponsor/2024...

submitted 86 days ago • 0 comments

#OME is now verified on @bsky.app! Follow to find out more about #Bio-Formats, #OMERO, #OME-TIFF, #OME-Zarr, #IDR, and much, much more. openmicroscopy.org

submitted 87 days ago • 0 comments

If you're chatting about Zarr on BlueSky, be sure to use the fancy new handle @zarr.dev 🔥

submitted 92 days ago • 1 comment

A huge Thank You to all participants for this fruitful & inspiring #NFDIBioMed workshop! @ghga.bsky.social @nfdi4microbiota.bsky.social #NFDI4Health #NFDI4Immuno @nfdi4bioimage.bsky.social Looking forward to fostering cross-consortia use cases towards #FAIR biomedical data. (videomusic: L. Conti)

submitted 92 days ago • 0 comments

Kicking off the OME-NGFF #hackathon 2024 at University of Zurich today! 🚀 With funding kindly provided by @nfdi4bioimage.bsky.social, we are bringing together experts on #OME #Zarr in Python, Java & image analysis workflows. Follow for updates on the future of a #FAIR bioimaging standard.

submitted 100 days ago • 0 comments