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kelly.sova.cool
Bioinformatics Software Engineer. PhD from Schloss Lab at UMich. https://sovacool.dev 🏃🏻‍♀️🚴🏻‍♀️🧗🏻‍♀️ #python #rstats #nextflow #snakemake she/her My views are my own.
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Share why doing and supporting science is patriotic at the poll below! 🇺🇸

This 4th of July, we're looking for scientists to share why they're proud to do science in the US. Or maybe you're not a scientist -- but you're proud of the work that US scientists do or you've benefited from US science research. Let us know in the survey below! forms.gle/j8gWMSggKVvJ...

NEW: Scientists are reeling from the Trump/DOGE-created funding crisis have come to a realization: the public doesn't know what they study or why So several groups have come up with plans to change that, with radically humble approaches www.nbcnews.com/news/us-news...

1/ R vs Python for bioinformatics? Which one should you learn first? I’ve used both. I started with one. Here’s what I learned the hard way:

according to conservatives on the court, the constitution does not protect your right to your own body but does enable the government to ship you off to a foreign gulag without any hope of return

Chatbots — LLMs — do not know facts and are not designed to be able to accurately answer factual questions. They are designed to find and mimic patterns of words, probabilistically. When they’re “right” it’s because correct things are often written down, so those patterns are frequent. That’s all.

As grant money starts drying up, it's more important than ever not to waste it on paying publishers' open access "article processing fees" when we can host PDFs for free. Tom Morgan and I wrote a paper on this, forthcoming at Science and Public Policy. Accepted draft here: osf.io/preprints/os...

A call to stand up and show support for the Bethesda Declaration, the NIH, and for federally funded science in general.

Furiously logging all the new budget news, laughing grimly that it landed *just after* we hit publish. Of course it did. Grateful that the entire point of @unbreaking.org is to give us a durable platform where we can keep integrating new developments. We'll digest, contextualize & update next week.

The US scientific enterprise is about to collapse unless we do something about it.

How bad will it be? Catastrophic. Proposed cuts to #NSF, #NIH, and #NASA will set the US R&D landscape back 25 yrs+, cause economic and job loss now, and undermine innovations to come. But, this is the WH's *proposed* budget. Speak up now before it is too late. (inflation adjusted $-s below)

If the CEO of a soda company declared that soda-making technology is getting so good it’s going to ruin the global economy, you’d be forgiven for thinking that person is either lying or fully detached from reality... www.cnn.com/2025/05/30/b...

Our op-ed in the Guardian addresses the danger of Trump's "Gold Standard Science" executive order. with @cdelawalla.bsky.social @vambros.bsky.social Carol Greider @michaelemann.bsky.social @briannosek.bsky.social

Germany is stepping up to create an alternative to PubMed that could be used globally. PubMed is a database that includes all of the critical scientific journal articles that researchers use. They are doing this because of serious concerns that PubMed will be pulled offline by The Regime.

pleased to report that the grandmother jailbreak still works for chatgpt 😂

tl;dr — this EO co-opts the language of open science to implement a system of political control wherein presidential appointees are given broad latitude to designate any number of reasonable scientific activities and inferences as scientific misconduct, and to penalize those involved accordingly.

Just remember: autocrats purge the universities or otherwise bring them to heel. It’s how it works: Orban, Modi in the modern era and dictators and tyrants going way back. They want a monopoly on telling you how to think. #doubleplusgood

1. It's Fustilarian Friday and today's drop is the "Restoring Gold Standard Science" executive order. My read is that this is designed to (1) protect far-fringe figures such as the antvaxxers now heading our health agencies, and (2) kneecap efforts to use scientific evidence in regulatory policy.

SNAP makes money! It keeps people from starving! It has literally no downsides! 85% of the country supports it for that obvious reason!

Who said complaining never solved anything??

Oh no, I think I’m going to have to actually learn SQL

i realize the title is a bit counterintuitive but the answer is that you cannot as an individual guarantee your food is safe. we can, as a collective, push back HARD on dismantling food safety regulations, and put pressure on an unpopular administration to keep our food from killing us.

Scientists work together with others across all sectors of our communities, including public health. This week, we’re bringing you an article from Alyssa Maturen, who leads a vaccine coalition & discusses how vaccines build strong, healthy communities for everyone. You can read & subscribe below:

If your perception is that all interactions are transactional and that there is no such thing as sincerity of curiosity, or a desire to discover, then you will never value science. No matter how many economic arguments there are for funding it. Because you don’t understand the fundamental premise.

It really works though!

Shout out to the home of my monthly column, @newscientist.com, which nailed their headline about the genetically modified GREY wolves www.newscientist.com/article/2475...

This week’s Neighborhood Scientist is Dr. Francesca Costabile, who discusses her journey through science, starting with an unconventional birthday celebration in her childhood. In addition, thank you to local artist Holy Diode for illustrating Francesca's immunological symphony! 🧪 👩‍🔬 Read below:

If you or someone you know has been negatively affected by NIH-funded clinical trials being paused, disrupted, cancelled etc., I have a contact with the Senate HELP Committee eager to collect stories of everyday Americans affected by the NIH closures. Please DM me.

I am going to lose my mind. Every previous coronavirus spilled over from animals. A novel virus has never leaked from a lab. Peak Ted Talk Brain to suggest that something *which has never happened* is the occam's razor explanation. www.nytimes.com/2024/06/14/b...

Seems like we’re having a “great new people should run for office” chat again. Awesome! However: I have yet to be convinced that “more scientists in office” is a better outcome for science than “people who are talented politicians who understand and value science and listen to their advisors.”