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marcodv.bsky.social
Microscopy and Image Analyst Expert at ISTA
11 posts 345 followers 494 following
Getting Started
Posts 9 Comments 5

Bioimage analysis professionals: join us in-person for a workshop at ISTA in Klosterneuburg, Austria, April 7–8, 2025. A workshop to adapt and expand the current Data Carpentries image processing curriculum. Information & registration: tinyurl.com/3twkax2k

submitted 26 days ago • 1 comment

Dishonest charts are coming from all directions, and they're only going to hit harder. Unless we push back. So, an interactive guide: Defense Against Dishonest Charts flowingdata.com/projects/dis...

submitted 15 days ago • 32 comments

Join us in person for shaping the future of this already great curriculum! #globias #image-analysis #microscopy

submitted 26 days ago • 0 comments

I would love to get more into using Marimo notebooks (docs.marimo.io) but I struggle to find a good image visualization approach. Napari doesn't seem to work, and ipywidgets neither. My current solution is to use plotly with marimo.ui elements, but it's not very efficient. Anyone has alternatives?

submitted 31 days ago • 0 comments

I often struggled to track objects in movies in Python. As much as I love [Btrack](btrack.readthedocs.io), it is sometime difficult to make sense of the configuration params. I recently found [LapTrack](github.com/yfukai/laptr...), a simple TrackMate-inspired tracker working with one param!

submitted 36 days ago • 1 comment

Call 4 Help Pilot Event by GloBIAS, 22 Jan–5 Feb 2025! Offering life scientists a chance for hands-on guidance & support for #bioimage_analysis using Napari, Ilastik & CellProfiler. 💡 Details: www.globias.org/activities/c... 🔗 Sign up! Application until Friday 17 Jan: forms.gle/7hsJgramrFXB...

submitted 47 days ago • 0 comments

Come and join our growing image analysis team at ISTA!

submitted 44 days ago • 0 comments

Don't you hate it when the last time you modified your Jupyter notebook was *next year*? 😂

submitted 92 days ago • 0 comments

I think I'm getting addicted to new #BigTrace in #Fiji by @ekatrukha.bsky.social 😅 So satisfying! Here's a live demo as I segment an entire notochord using the 'one-click' tracking tool and instantly straighten the entire thing for later analysis! Try it out here: github.com/ekatrukha/Bi...

submitted 99 days ago • 0 comments