methylrot.bsky.social - Profile | ThreadSky | a Reddit-style client for Bluesky

methylrot.bsky.social

Code 🐒 Lab 🐁

20 posts 134 followers 1,358 following

Posts 17 Comments 21

📦 Packaging Python apps just got easier! @rjai.me 's latest #QuansightLabs blog explores how napari's team reimagined installers, creating tools that benefit the entire scientific computing community. https://buff.ly/4jMCZxx 🔬 #OpenSourceInnovation

submitted 23 days ago • 0 comments

Reminder that @europepmc.org is a mirror of Pubmed with better search and that it indexes all bioRxiv preprints (as well as ResearchSquare), not just the ones funded by NIH like chauvinist Pubmed

submitted 27 days ago • 9 comments

a bit more #Severance data please enjoy all analyses equally 👉 lucymcgowan.github.io/mdr-website/ and for my #rstats friends: 👉 lucymcgowan.github.io/mdr/

submitted 27 days ago • 20 comments

Hi, @brukerspatial.bsky.social In www.nature.com/articles/s41... You presented a dataset with 980 RNAs and 108 proteins. But on staging.nanostring.com/products/cos... I only find the RNA and a couple of protein markers for QC and segmentation. Where can I find the rest of the protein data? Ty!

submitted 38 days ago • 1 comment

In one year, I genetically engineered the boring Arabidopsis into a beautiful ornamental flower 🧬🌹 Here is how and why I gave this model organism a visual upgrade 🧵(1/7)

submitted 77 days ago • 23 comments

Are you frustrated by how GitHub renders Jupyter notebooks? I have public service that renders GitHub notebooks with Quarto nbsanity.com It now works with gists!

submitted 82 days ago • 8 comments

I could not be more thrilled to announce the Nature Methods @naturemethods.bsky.social Method of the Year is Spatial Proteomics! Please see our editorial as a roadmap to the fantastic content in this special issue! www.nature.com/articles/s41...

submitted 83 days ago • 1 comment

Excited to share a new algorithm that we have been working on over the last year. 💡 idea is to extend mutual nearest neighbors for #spatial data. We call it spatial mutual nearest neighbors (spatialMNN) 😄 Thank you @haowen-zhou.bsky.social @pratibha-panwar.bsky.social who led this work! 👏 🧬🖥️🧪

submitted 84 days ago • 4 comments

A little piece that's been in the works with former MSc, now PhD student, Jiayi Wang & @markrobinsonca.bsky.social in the multi-sample/-condition/-subpopulation theme: ...

submitted 85 days ago • 1 comment

Academic job ads when there is an internal candidate.

submitted 89 days ago • 2 comments

New method for identifying spatially variable genes in spatial transcriptomics. We use spectral graph theory to extract 1D curves related to tissue morphology, creating a more relevant coordinate system. Improves sensitivity. with @PhillipNicol et al. www.biorxiv.org/content/10.1...

submitted 97 days ago • 0 comments

I have a YouTube playlist (10 videos) for #MolecularBiology for my undergrad interns in the lab. www.youtube.com/playlist?lis... I usually have my interns watch these videos to get introduced to the basic concepts before I go show them how to in the lab.

submitted 102 days ago • 7 comments

Bluesky for Science Starter packs for genomics, bioinformatics, #Rstats, Nextflow. Moderation lists. Feeds. Let's rebuild the old scitwitter community and keep this place nice blog.stephenturner.us/p/bluesky-fo... 🧬🖥️🧪

submitted 103 days ago • 35 comments

We just released 8 new data wrangling tutorials for biologists! sandbox.bio/community/da... 💻 🧬

submitted 104 days ago • 2 comments

I made a bot that posts pre-prints of single cell papers: @prepub-singlecell.bsky.social (I posted about it a little while ago when no one was here, so posting again now :D) It's pretty dumb so very open to suggestions for improvements!

submitted 106 days ago • 1 comment

Reminder for newcomers that bioRxiv has Bluesky accounts in every subject category - great way to keep up (please re-skeet) connect.biorxiv.org/news/2023/09...

submitted 109 days ago • 6 comments

Made an RNA Biology starter pack for folks moving over from Twitter go.bsky.app/77FHCU1 #rnabiology 🧪 #rna

submitted 111 days ago • 61 comments