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nizet.bsky.social
Physician-scientist at UC San Diego, Microbiology, Immunology, Novel Drug and Vaccine Discovery, #IDSky, Mentoring and Supporting STEM Career Development. Enjoy exploring the outdoors, world cultures, sports, comedy, community. http://nizetlab.ucsd.edu
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The bacteria that causes Q FEVER with some elegant NICHE ENGINEERING! ๐˜Š๐˜ฐ๐˜น๐˜ช๐˜ฆ๐˜ญ๐˜ญ๐˜ข ๐˜ฃ๐˜ถ๐˜ณ๐˜ฏ๐˜ฆ๐˜ต๐˜ช๐˜ช survives in a hostile PHAGOLYSOME by kicking out key host protease CATHEPSIN B With Dot/Icm secretion and retrograde trafficking, it remodels its vacuole into a friendlier home www.nature.com/articles/s41...

New hope for LYME DISEASE, right under our eyes? Unbiased screen surprisingly shows PIPERACILLIN can wipe out ๐˜‰๐˜ฐ๐˜ณ๐˜ณ๐˜ฆ๐˜ญ๐˜ช๐˜ข ๐˜ฃ๐˜ถ๐˜ณ๐˜จ๐˜ฅ๐˜ฐ๐˜ณ๐˜ง๐˜ฆ๐˜ณ๐˜ช in mice at tiny doses โ€” 100 times lower than doxycycline โ€” while leaving gut bacteria intact Jutras Lab Northwestern Sci Transl Med www.science.org/doi/10.1126/...

๐—ฃ๐—ผ๐˜๐—ฒ๐—ป๐˜๐—ถ๐—ฎ๐—น ๐——๐—ถ๐˜€๐—ฒ๐—ฎ๐˜€๐—ฒ-๐—™๐—ฎ๐—ฐ๐—ถ๐—น๐—ถ๐˜๐—ฎ๐˜๐—ถ๐—ป๐—ด ๐—•๐—ฎ๐—ฐ๐˜๐—ฒ๐—ฟ๐—ถ๐—ฎ ๐—Ÿ๐—ถ๐—ป๐—ธ๐—ฒ๐—ฑ ๐˜๐—ผ ๐— ๐˜‚๐—น๐˜๐—ถ๐—ฝ๐—น๐—ฒ ๐—ฆ๐—ฐ๐—น๐—ฒ๐—ฟ๐—ผ๐˜€๐—ถ๐˜€ Story in PNAS: Gut microbiota from human twins discordant for MS transplanted into germ free miceโ€”two species made mice more prone to MS-like disease: ๐™€๐™ž๐™จ๐™š๐™ฃ๐™—๐™š๐™ง๐™œ๐™ž๐™š๐™ก๐™ก๐™– ๐™ฉ๐™–๐™ฎ๐™ž and ๐™‡๐™–๐™˜๐™๐™ฃ๐™ค๐™˜๐™ก๐™ค๐™จ๐™ฉ๐™ง๐™ž๐™™๐™ž๐™ช๐™ข www.pnas.org/doi/10.1073/...

cellular transport

Early-onset colorectal cancer has doubled in 20 yearsโ€”why? New ๐˜•๐˜ข๐˜ต๐˜ถ๐˜ณ๐˜ฆ study from Dรญaz-Gay et al Ludmil Alexandrov lab here @UCSanDiego discovers mutational clues: Exposure to bacteria-derived colibactin leaves a genetic imprint, especially in tumors from young people and high-incidence countries

Rewarding visit to @uvic.ca as Lansdowne Visiting Professor in the Department of Biochemistry & Microbiology meeting the amazing students and faculty, a seminar plus a public lecture North American science is in good hands with our ๐Ÿ‡จ๐Ÿ‡ฆ neighbors Hosted by staph scientist @stephentuffs.bsky.social

๐๐ซ๐ข๐ž๐Ÿ ๐š๐ง๐ญ๐ข๐›๐ข๐จ๐ญ๐ข๐œ ๐ž๐ฑ๐ฉ๐จ๐ฌ๐ฎ๐ซ๐ž ๐‹๐จ๐ง๐ -๐ญ๐ž๐ซ๐ฆ ๐œ๐จ๐ง๐ฌ๐ž๐ช๐ฎ๐ž๐ง๐œ๐ž๐ฌ Short course ciprofloxacin triggered de novo gyrA mutations in human gut bacteriaโ€”mutations stuck around for months without fitness cost Even brief antibiotic pressure leaves a lasting genetic mark Relman Lab ๐˜•๐˜ข๐˜ต๐˜ถ๐˜ณ๐˜ฆ www.nature.com/articles/s41...

The slowest animal is neither a sloth nor a starfish Rather, the slowest animal is a snail riding a turtleโ€”missing appointments leaving friends hanging everywhere they go ๐ŸŒ ๐Ÿข

Pleased to share our new paper out in ๐˜‘๐˜ฐ๐˜ถ๐˜ณ๐˜ฏ๐˜ข๐˜ญ ๐˜ฐ๐˜ง ๐˜Š๐˜ญ๐˜ช๐˜ฏ๐˜ช๐˜ค๐˜ข๐˜ญ ๐˜๐˜ฏ๐˜ท๐˜ฆ๐˜ด๐˜ต๐˜ช๐˜จ๐˜ข๐˜ต๐˜ช๐˜ฐ๐˜ฏ led by Monika Kumaraswamy, MD, now Chief of Infectious Diseases UTexas-Tyler Is minimimum inhibitory concentration (MIC) testing the gold standard for antibiotic-resistant superbugs? ๐Ÿฆ  ๐Ÿงซ ๐Ÿงต 1/6 www.jci.org/articles/vie...

to really take your research to the next level, it is important to build interdisciplinary teams #collaboration #scientificinterfaces

CHECK IT OUT ๐Ÿฆ ๐Ÿ‘€ Very cool article by science journalist Carrie Arnold reviewing recent research from leading laboratories on how the unique shape of a microbial #biofilm emerges from interactions of its component microbes with each other and their environment www.quantamagazine.org/how-a-biofil...

SPIT TAKE New study out in the journal ๐˜—๐˜ฉ๐˜บ๐˜ด๐˜ช๐˜ค๐˜ข๐˜ญ ๐˜™๐˜ฆ๐˜ท๐˜ช๐˜ฆ๐˜ธ ๐˜๐˜ญ๐˜ถ๐˜ช๐˜ฅ๐˜ด uses an Interferometric Laser Imaging for Droplet Sizing (ILIDS) technique to characterize the size and speed of respiratory droplets and identify superspreader phenotypes We all know somebody โ€ฆ. www.sciencealert.com/differences-...

โ“?โ“?โ“?โ“?โ“?โ“?โ“?โ“ ๐‘ณ๐’†๐’‘๐’•๐’๐’”๐’‘๐’Š๐’“๐’‚ ๐’Š๐’๐’•๐’†๐’“๐’“๐’๐’ˆ๐’‚๐’๐’” causes leptospirosis, the worldโ€™s most common zoonotic infection the spirochete gets its latin name โ€œinterrogansโ€ for being shaped like a question mark spread through contact with soil or water contaminated with urine of infected rodents โ“?โ“?โ“?โ“?โ“?โ“?โ“?โ“

New immune cell population just dropped! Unique group of ILC3s lives ๐™„๐™‰๐™Ž๐™„๐˜ฟ๐™€ lung blood vessels, not the tissue. Upon ๐˜—๐˜ด๐˜ฆ๐˜ถ๐˜ฅ๐˜ฐ๐˜ฎ๐˜ฐ๐˜ฏ๐˜ข๐˜ด infection, they quickly mobilize CCL4 to summon neutrophils Without them, bacterial clearance is delayed and inflammation lingers www.nature.com/articles/s41...

Help - have room for one more song on my 1980s bands clinical microbiology lab mixtape ๐ŸŽง ๐ŸŽถ 1. Milli Bacilli 2. Sammy Agar 3. CentriFugees 4. Run HPLC 5. Dire Substrates 6. Pipette Shop Boys 7. Gram- Rod Stewart 8. Salt-N-StrepA 9. Yeastie Boys

sat on this branch beside me for two minutes and didnโ€™t make a sound โ€” papa owes me a diamond ring

Krista Freeman et al ๐˜Š๐˜Œ๐˜“๐˜“ stunning atomic-level imaging (Cryo-EM, cryo-ET) reveals how ๐›๐š๐œ๐ญ๐ž๐ซ๐ข๐จ๐ฉ๐ก๐š๐ ๐ž Bxb1 reshapes its tail tip to breach the mycobacterial cell wall and deliver DNA to the cytoplasm can inform precise targeted phage therapies for TB and NTM infections www.cell.com/cell/fulltex...

Fascinating innate immune evasion strategy in SCIENCE #glycotime ๐˜—๐˜ด๐˜ฆ๐˜ถ๐˜ฅ๐˜ฐ๐˜ฎ๐˜ฐ๐˜ฏ๐˜ข๐˜ด ๐˜ด๐˜บ๐˜ณ๐˜ช๐˜ฏ๐˜จ๐˜ข๐˜ฆ makes GLYCOSIRIN, a novel iminosugar that blocks plant glycosidases from degrading bacterial flagellinโ€”hiding pathogens from plant immune sensors. New cryo-EM insights reveal exactly how this stealthy trick works

Congrats to Qpex BioPharma and Shionogi Group, a superlative anti-infective discovery partnership, on a festive grand opening of their new research facilities Qpex President/CEO Michael Dudleyโ—‰UCSD Skaggs Pharmacyโ€™s Jacinda Abdul-Mutakabbirโ—‰Rady Childrenโ€™s John Bradleyโ—‰San Diego Mayor Todd Gloria

At the peak of the 2017 insanity, over 50 million fidget spinners were sold in just a few monthsโ€”a good chunk of them to our then middle school-aged son Now that these kids are hitting college, are we about to see the big societal payoff? Here: ultrasensitive bacterial detection and identification

แ—ฐIแ‘•แ–‡Oแ—ทIOTแ—ฉ ๐Ÿฆ  แ•ผEแ’ชแ‘ญ แ–ดIGแ•ผT แ‘•แ—ฉแ‘Žแ‘•Eแ–‡ ๐Ÿ’ช Gut bacteria produce bile acids that block the androgen receptor within CD8+ T cells, enhancing their stemness and anti-tumor activity One bile acid slowed prostate cancer tumor growth and boosted response to antiโ€“PD-1 immunotherapy Jin et al (Cornell Weill) CELL

Spouse: โ€œYouโ€™ve been quiet all evening.โ€ Microbiologist: (sighs) Spouse: "Is everything OK?โ€œ Microbiologist: "Yeah, Iโ€™ve just got a lot on my plate right now.โ€

Most antibiotics have a single target ๐˜พ๐™ƒ๐™‡๐™Š๐™๐™Š๐™๐™Š๐™‰๐™„๐™‡๐™Ž ๐™ƒ๐™„๐™ ๐™๐™ƒ๐™๐™€๐™€ !!! Natural products kill MDR Gram+ pathogens like MRSA by โ€“ Depolarizing membranes โ€“ Inhibiting peptidoglycan synthesis โ€“ Jamming protein production All-in-1 combo therapy? Minimal host toxicity Hermann Lab Saarbrรผcken ๐˜Š๐˜ฆ๐˜ญ๐˜ญ ๐˜Š๐˜ฉ๐˜ฆ๐˜ฎ ๐˜‰๐˜ช๐˜ฐ๐˜ญ

๐š‚.๐™ฟ.๐š.๐™ด.๐™ฐ.๐™ณ. ๐šƒ.๐™ท.๐™ด. ๐™ผ.๐™ด.๐š‚.๐š‚.๐™ฐ.๐™ถ.๐™ด. (๐š๐™ฝ๐™ฐ, ๐šƒ๐™ท๐™ฐ๐šƒ ๐™ธ๐š‚)

Antivirulence strategies can spare the microbiome and minimize AMR selective pressure New discovery of small molecule C26 that blocks ๐˜š๐˜ข๐˜ญ๐˜ฎ๐˜ฐ๐˜ฏ๐˜ฆ๐˜ญ๐˜ญ๐˜ข host cell invasion by targeting HilDโ€”a master regulator its secretion systems (T1SS, T3SS-1, T3SS-2) Donโ€™t destroy โ€” DISARM Wagner Lab Tรผbingen Sci Adv

so many metaphors

we had a magnitude 5.2 earthquake this morning that struck our microbiology research lab (and greater san diego county) โ€” everyone got to experience a little brownian motion but fortunately no major damage

"๐˜Œ๐˜ญ๐˜ช๐˜ฎ๐˜ช๐˜ฏ๐˜ข๐˜ต๐˜ช๐˜ฏ๐˜จ ๐˜ด๐˜ถ๐˜ค๐˜ฉ ๐˜ข ๐˜ญ๐˜ข๐˜ณ๐˜จ๐˜ฆ ๐˜ฑ๐˜ฐ๐˜ณ๐˜ต๐˜ช๐˜ฐ๐˜ฏ ๐˜ฐ๐˜ง ๐˜ต๐˜ฉ๐˜ฆ ๐˜๐˜๐˜š ๐˜ธ๐˜ฐ๐˜ณ๐˜ฌ๐˜ง๐˜ฐ๐˜ณ๐˜ค๐˜ฆ ๐˜ธ๐˜ช๐˜ญ๐˜ญ ๐˜ฑ๐˜ถ๐˜ต ๐˜ต๐˜ฉ๐˜ฆ ๐˜ญ๐˜ช๐˜ท๐˜ฆ๐˜ด ๐˜ฐ๐˜ง ๐˜ฎ๐˜ช๐˜ญ๐˜ญ๐˜ช๐˜ฐ๐˜ฏ๐˜ด ๐˜ฐ๐˜ง ๐˜ˆ๐˜ฎ๐˜ฆ๐˜ณ๐˜ช๐˜ค๐˜ข๐˜ฏ๐˜ด ๐˜ข๐˜ต ๐˜ณ๐˜ช๐˜ด๐˜ฌ ๐˜ข๐˜ด ๐˜ญ๐˜ช๐˜ง๐˜ฆ๐˜ด๐˜ข๐˜ท๐˜ช๐˜ฏ๐˜จ ๐˜ค๐˜ถ๐˜ณ๐˜ฆ๐˜ด ๐˜ข๐˜ฏ๐˜ฅ ๐˜ต๐˜ณ๐˜ฆ๐˜ข๐˜ต๐˜ฎ๐˜ฆ๐˜ฏ๐˜ต๐˜ด ๐˜ข๐˜ณ๐˜ฆ ๐˜ฑ๐˜ถ๐˜ด๐˜ฉ๐˜ฆ๐˜ฅ ๐˜ง๐˜ถ๐˜ณ๐˜ต๐˜ฉ๐˜ฆ๐˜ณ ๐˜ช๐˜ฏ๐˜ต๐˜ฐ ๐˜ต๐˜ฉ๐˜ฆ ๐˜ง๐˜ถ๐˜ต๐˜ถ๐˜ณ๐˜ฆ ๐˜ข๐˜ฏ๐˜ฅ ๐˜ฑ๐˜ถ๐˜ฃ๐˜ญ๐˜ช๐˜ค ๐˜ฉ๐˜ฆ๐˜ข๐˜ญ๐˜ต๐˜ฉ ๐˜ต๐˜ข๐˜ฌ๐˜ฆ๐˜ด ๐˜ข ๐˜ฃ๐˜ข๐˜ค๐˜ฌ ๐˜ด๐˜ฆ๐˜ข๐˜ต ๐˜ต๐˜ฐ ๐˜ฑ๐˜ฆ๐˜ณ๐˜ด๐˜ฐ๐˜ฏ๐˜ข๐˜ญ ๐˜จ๐˜ณ๐˜ช๐˜ฆ๐˜ท๐˜ข๐˜ฏ๐˜ค๐˜ฆ ๐˜ข๐˜ฏ๐˜ฅ ๐˜ฑ๐˜ข๐˜ณ๐˜ข๐˜ฏ๐˜ฐ๐˜ช๐˜ข"

PRETTY AWESOME Sidor et al. PNAS take a single enzyme from a marine sponge and express it in E. coli, conferring the ability to self-assemble bioglass from silica precursors present in ocean water End result? Living, light-focusing microlenses that persist for months Cheap, durable photonics

New paper in CELL from Stallforth Lab in Leibniz ๐—•๐—”๐—–๐—ง๐—˜๐—ฅ๐—œ๐—”-๐—”๐— ๐—ข๐—˜๐—•๐—”๐—˜ ๐—ช๐—”๐—ฅ๐—™๐—”๐—ฅ๐—˜ ๐˜—๐˜ด๐˜ฆ๐˜ถ๐˜ฅ๐˜ฐ๐˜ฎ๐˜ฐ๐˜ฏ๐˜ข๐˜ด ๐˜ด๐˜บ๐˜ณ๐˜ช๐˜ฏ๐˜จ๐˜ข๐˜ฆ turns predator metabolism into a triggerโ€”detecting amoebae via deacylated syringafactin, then striking back with amoebicidal pyrofactin Very apt analogy: chemical radar launches a molecular self-defense

โ‰‹Bโ‰‹Aโ‰‹Cโ‰‹Tโ‰‹Eโ‰‹Rโ‰‹Iโ‰‹Aโ‰‹Lโ‰‹ โ‰‹Sโ‰‹Pโ‰‹Eโ‰‹Eโ‰‹Dโ‰‹ The spirochete that causes Lyme disease was clocked at 2,800 ยตm/min moving back and forth across a plateletโ€”100 times greater than the speed of a neutrophil, the fastest human cell Petition to rename: "๐˜ฝ๐™ค๐™ง๐™ง๐™š๐™ก๐™ž๐™– ๐™—๐™ช๐™ง๐™œ๐™™๐™ค๐™ง๐™๐™€๐™๐™๐˜ผ๐™๐™„" Ref: doi:10.1371/journal.pone.0001633

Awesome How cells fold DNA into tightly packed X-shaped chromosomes in mitosis for accurate passing of genetic informationโ€”new SCIENCE paper Dekker Lab UMass www.science.org/doi/10.1126/... Fun video set to Straussโ€™s Waltz โ€œVoices of Springโ€ And here I am still struggling with a fitted bedsheet

From Ardem Patapoutian, an inspiring scientist and thought leader among his colleagues here in San Diego and around the worldโ€”well worth the read

แ—ชIแ—ช YOแ‘Œ Kแ‘ŽOแ—ฏ? The biggest viruses are four times larger than the smallest bacteria ๐—ฃ๐—ฎ๐—ป๐—ฑ๐—ผ๐—ฟ๐—ฎ๐˜ƒ๐—ถ๐—ฟ๐˜‚๐˜€๐—ฒ๐˜€ (top): โ€ข Size: 1,000 nm length โ€ข Genome: 2.5 million bp, encoding 2,000 genes ๐™ˆ๐™ฎ๐™˜๐™ค๐™ฅ๐™ก๐™–๐™จ๐™ข๐™– ๐™œ๐™š๐™ฃ๐™ž๐™ฉ๐™–๐™ก๐™ž๐™ช๐™ข (bottom): โ€ข Size: 200โ€“300 nm diameter โ€ข Genome: 580,000 bp, encoding 480 genes

who will make the first thermocycler for eggs? method published alternates the egg between boiling water (212ยฐF sort of like "denaturing") and tepid water (86ยฐF sort of like "annealing") for 2 min at a time, repeat cycle 8 times (16 steps) for a total of 32 min www.nature.com/articles/s44...

#MedSky what are your favorite medical terms that sound cool but few people recognize because there is already a common synonym used in daily conversation? my top 3: 1. ecchymosis (bruise) 2. syncope (fainting) 3. pruritis (itch)