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Detection of human unannotated microproteins by mass spectrometry-based proteomics: a community assessment www.biorxiv.org/cont... --- #proteomics #prot-preprint

submitted 15 hours ago • 0 comments

Seeking community input for: mzPeak - a modern, scalable, and interoperable mass spectrometry data format for the future zenodo.org/records/1... --- #proteomics #prot-other

submitted 15 hours ago • 0 comments

Ultradeep Phosphoproteomics for Assessing Protein Kinase Inhibitor Selectivity on a Proteome Scale pubs.acs.org/doi/10.... --- #proteomics #prot-paper

submitted 18 hours ago • 0 comments

Mass-spectrometry-based proteomics: from single cells to clinical applications www.nature.com/artic... --- #proteomics #prot-paper

submitted 18 hours ago • 0 comments

Engineer or Technician for the Proteomics Facility (m/f/d) - Frankfurt am Main, Hessen (DE) www.nature.com/natur... --- #proteomics #prot-jobs

submitted 1 day ago • 0 comments

Enhancing tandem MS sensitivity and peptide identification via ion pre-accumulation in an Orbitrap mass spectrometer www.biorxiv.org/cont... --- #proteomics #prot-preprint

submitted 1 day ago • 0 comments

AstraPTM: Context-Aware PTM Prediction Model for Large-Scale Proteins www.biorxiv.org/cont... --- #proteomics #prot-preprint

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Strategic priorities for transformative progress in advancing... arxiv.org/abs/2502.1... --- #proteomics #prot-preprint

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Recent Advances in Mass Spectrometry-Based Bottom-Up Proteomics pubs.acs.org/doi/10.... --- #proteomics #prot-paper

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Isobaric Labeling Update in MaxQuant pubs.acs.org/doi/10.... --- #proteomics #prot-paper

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Enhancing Proteomics Quality Control: Insights from the Visualization Tool QCeltis pubs.acs.org/doi/10.... --- #proteomics #prot-paper

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O-GlcNAcAtlas 4.0: An updated protein O-GlcNAcylation database with site-specific quantification www.sciencedirect.co... --- #proteomics #prot-paper

submitted 3 days ago • 0 comments

Spotting targets with 2D-DIGE proteomics www.sciencedirect.co... --- #proteomics #prot-paper

submitted 3 days ago • 0 comments

Protein Data Bank Japan: Improved tools for sequence‐oriented analysis of protein structures onlinelibrary.wiley.... --- #proteomics #prot-paper

submitted 3 days ago • 0 comments

ProteoAutoNet: high-throughput co-eluted protein analysis with robotics and a multi-database search strategy www.biorxiv.org/cont... --- #proteomics #prot-preprint

submitted 4 days ago • 0 comments

Universal orthologs infer deep phylogenies and improve genome quality assessments www.biorxiv.org/cont... --- #proteomics #prot-preprint

submitted 4 days ago • 0 comments

BENDER DB: a database of protein binding sites across neglected disease proteomes www.biorxiv.org/cont... --- #proteomics #prot-preprint

submitted 4 days ago • 0 comments

Collisional cross-section prediction for multiconformational peptide ions with IM2Deep www.biorxiv.org/cont... --- #proteomics #prot-preprint

submitted 4 days ago • 0 comments

Boosting metaproteomics identification rates and taxonomic specificity with MS2Rescore www.biorxiv.org/cont... --- #proteomics #prot-preprint

submitted 4 days ago • 0 comments

A Scalable, Web-Based Platform for Proteomics Data Processing, Result Storage and Analysis pubs.acs.org/doi/10.... --- #proteomics #prot-paper

submitted 4 days ago • 0 comments

Multi-Omics: Unlocking the Complexity of the Proteome | Inside Precision Medicine www.liebertpub.com/d... --- #proteomics #prot-paper

submitted 4 days ago • 0 comments

Comparative studies of 2168 plasma proteins measured by two affinity-based platforms in 4000 Chinese adults www.nature.com/artic... --- #proteomics #prot-paper

submitted 4 days ago • 0 comments

1000 fold Ultra‐Photosensitized Fluorescent Protein Mimics Toward Photocatalytic Proximity Labeling and Proteomic Profiling Functions advanced.onlinelibra... --- #proteomics #prot-paper

submitted 4 days ago • 0 comments

MS-based Solutions for Single Cell Proteomics academic.oup.com/gpb... --- #proteomics #prot-paper

submitted 4 days ago • 0 comments

SpectroPipeR—a streamlining post Spectronaut® DIA-MS data analysis R package academic.oup.com/bio... --- #proteomics #prot-paper

submitted 4 days ago • 0 comments

The Current Landscape of Plasma Proteomics: Technical Advances, Biological Insights, and Biomarker Discovery www.biorxiv.org/cont... --- #proteomics #prot-preprint

submitted 4 days ago • 0 comments

Tribus: Semi-automated discovery of cell identities and phenotypes from multiplexed imaging and proteomic data academic.oup.com/bio... --- #proteomics #prot-paper

submitted 6 days ago • 0 comments

Swift Universal Glycan Acquisition (SUGA) Enables Quantitative Glycan Profiling across Diverse Sample Types pubs.acs.org/doi/10.... --- #proteomics #prot-paper

submitted 6 days ago • 0 comments

Glyco-STORM: Nanoscale Mapping of the Cellular Glycosylation Landscape www.biorxiv.org/cont... --- #proteomics #prot-preprint

submitted 6 days ago • 0 comments

News in Proteomics Research blog post | Finally! A comparison of different modalities for plasma proteomics! proteomicsnews.blogs... --- #proteomics #prot-other

submitted 6 days ago • 0 comments

Unraveling diversity by isolating peptide sequences specific to distinct taxonomic groups www.biorxiv.org/cont... --- #proteomics #prot-preprint

submitted 7 days ago • 0 comments

AlphaPept: a modern and open framework for MS-based proteomics researchprofiles.ku.... --- #proteomics #prot-paper

submitted 7 days ago • 0 comments

Decoding Sugars: Mass Spectrometric Advances in the Analysis of the Sugar Alphabet analyticalsciencejou... --- #proteomics #prot-paper

submitted 7 days ago • 0 comments

Single-Cell Proteomics Using Mass Spectrometry arxiv.org/abs/2502.1... --- #proteomics #prot-preprint

submitted 7 days ago • 0 comments

Current Understanding of Dried Spots Platform for Blood Proteomics www.eurekaselect.com... --- #proteomics #prot-paper

submitted 7 days ago • 0 comments

Plasma proteome variation and its genetic determinants in children and adolescents www.nature.com/artic... --- #proteomics #prot-paper

submitted 7 days ago • 0 comments

News in Proteomics Research blog post | MS2Bac - Explore, identify and classify bacteria across hundreds of species! proteomicsnews.blogs... --- #proteomics #prot-other

submitted 8 days ago • 0 comments

The Proteoform Program of Life: Deciphering Evolution at the Protein Level pubs.acs.org/doi/10.... --- #proteomics #prot-paper

submitted 9 days ago • 0 comments

Rewiring protein sequence and structure generative models to enhance protein stability prediction www.biorxiv.org/cont... --- #proteomics #prot-preprint

submitted 9 days ago • 0 comments

In Silico Identification of Potential Plastic-Active Proteins in Fungi Through a Proteome Comparison Using the Pazy Database | IEEE Conference Publication | IEEE Xplore ieeexplore.ieee.org/... --- #proteomics #prot-paper

submitted 9 days ago • 0 comments

optTMT: A Shiny application to optimize any experimental design to minimize the TMT reporter ion interference zenodo.org/records/1... --- #proteomics #prot-other

submitted 9 days ago • 0 comments

News in Proteomics Research blog post | Top down proteomics by EAD! proteomicsnews.blogs... --- #proteomics #prot-other

submitted 10 days ago • 0 comments

Establishing a Top-Down Proteomics Platform on a Time-of-Flight Instrument with Electron-Activated Dissociation pubs.acs.org/doi/10.... --- #proteomics #prot-paper

submitted 10 days ago • 0 comments

Overlap of Formalin-Fixed Paraffin-Embedded and Fresh-Frozen Matched Tissues for Proteomics and Phosphoproteomics pubs.acs.org/doi/ful... --- #proteomics #prot-paper

submitted 10 days ago • 0 comments

Proteomic stable isotope probing with an upgraded Sipros algorithm for improved identification and quantification of isotopically labeled proteins - Microbiome microbiomejournal.bi... --- #proteomics #prot-paper

submitted 10 days ago • 0 comments

Targeted Data Extraction of the MS/MS Spectra Generated by Data-independent Acquisition: A New Concept for Consistent and Accurate Proteome Analysis - Research Collection www.research-collect... --- #proteomics #prot-paper

submitted 11 days ago • 0 comments

News in Proteomics Research blog post | Single cell lipidomics by nanoLC TIMSTOF! proteomicsnews.blogs... --- #proteomics #prot-other

submitted 11 days ago • 0 comments

News in Proteomics Research blog post | Holy crap - US HUPO starts this week (Saturday! 2/22/25)! proteomicsnews.blogs... --- #proteomics #prot-other

submitted 11 days ago • 0 comments

Towards standardization and a concerted vision for platelet proteomics research: communication from the ISTH SSC subcommittees Models of Thrombosis and Hemostasis, Platelet Physiology and Predictive and Diagnostic Variables in Thrombotic Disease www.sciencedirect.co... --- #proteomics #prot-paper

submitted 12 days ago • 0 comments

Largest proteome study enlists 14 biopharmas www.nature.com/artic... --- #proteomics #prot-paper

submitted 12 days ago • 0 comments