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preibischs.bsky.social
Open Science Software Enthusiast - Director of Scientific Computing Software at HHMI Janelia
59 posts 1,237 followers 452 following
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“Join the Pigino Lab! We’re hiring a PhD student to explore primary cilia biology using advanced imaging, spatial ‘omics, and AI. Apply now at www.cilia-ai.eu and be part of the Cilia-AI Doctoral Network!”

🚨🚨 MEGA JOB ALERT 🚨🚨 Independent Group Leader Positions in Computational Biology @humantechnopole.bsky.social! Are you ready to start your own lab? Do you know someone who is? Repost this + share with everyone who might want to know about it. Thanks!!! 🙏 More details below... check it out! 🧵 1/3

Do you love software engineering for exciting biological applications, open science,open source, R, Bioconductor, modern web, cloud& ML technologies? We're looking for a software engineer to work on R/Bioconductor tools for biological data science and AI embl.wd103.myworkdayjobs.com/en-US/EMBL/j...

Special issue on C. elegans genetics and biology @heredityjournal.bsky.social. Submit your manuscripts by 1st May 2025. Contact me for more info. www.nature.com/collections/...

🧪Job opening at Janelia @hhmijanelia.bsky.social Integrative Imaging platform for a bioimage analyst. Please repost.

#Cellpose 3 paper now out. Not all images are perfect. Restore your images with Cellpose3 to get better segmentations, w/ @marius10p.bsky.social www.nature.com/articles/s41...

After a long journey, Segment Anything for Microscopy is now published in Nature Methods! We significantly improve SAM for interactive and automatic segmentation in light and electron microscopy and build a user-friendly tool. www.nature.com/articles/s41...

We are recruiting! Center for Gene Expression has 2 or more open positions for PhDs @ucph.bsky.social. Come join our team to work on RNAPII and transcriptional regulation (gregersenlab.com). It's a wonderful city and amazing research environment. Deadline March 6. jobportal.ku.dk/phd/?show=16...

🚨 Job Alert 🚨🔬🧪👩‍💻🖥️ Are you interested in #BioimageAnalysis #ComputerVision #AI #ML methods for the #LifeSciences? Do you want to work on #DigitalPathology of tissues, cells, organelles? Check out this #PostDoc opportunity in a collaboration with Jens Rittscher from @oxengsci.bsky.social @ox.ac.uk

📢 Submissions are now open for the CellMap Segmentation Challenge. Build the best method for segmenting cellular organelles in vEM using our 289 annotated volumes, 40 organelle classes, and 22 diverse cell and tissue types. 🔗 hhmi.news/410evJQ

Welcome immigrants from X interested in science to the friendlier skies of @bsky.app, as documented by a new @nature.com survey (but you already knew that 😉) "Bluesky is much better for science. There is much less toxicity, misinformation, and distractions." www.nature.com/articles/d41...

I wonder …

Very excited to read this: The nature of the last universal common ancestor and its impact on the early Earth system www.nature.com/articles/s41...

De novo designed proteins neutralize lethal snake venom toxins | Nature www.nature.com/articles/s41...

Microscopy Nodes is now up on bioRxiv! 🚀 This is a Blender extension that seamlessly integrates and visualizes 3D microscopy data (TIF & @zarr.dev). High-quality volume rendering for anyone, in both EM and fluorescence, regardless of computational expertise! 🔬 www.biorxiv.org/content/10.1...

Now for my Max Planck peeps… Get yer institutions onto Bsky and off of X.

Finally had a bit of time to play with multi-GPU deconvolution. Using @truenorth-ia.bsky.social and @haesleinhuepf.bsky.social previous work. Here it is in action in #BigDataViewer using async and lazy processing. Look at the two poor laptop GPUs going as fast as they can:

It seema a bit weird that @fairfaxcounty.bsky.social public schools are still closed on Wednesday. Why? Streets are completely free, no new snow …

@glaevsky.bsky.social is LSFM a conference and training course again this year? I'd like to come if there's a conference portion!

I was very impressed with the great food at the Green Kitchen Lab at the Irchel campus of the Zurich university: “The culinary offering is based primarily on seasonal, regional and, as far as possible, natural food from plant sources.” www.mensa.uzh.ch/en/menueplae...

We’re #hiring Theory Fellows. 🥼 Our Computation & Theory research area is recruiting early-career scientists to test theories, collaborate across research areas & tackle fundamental questions in biology. Apply by Jan. 7 ➡️ janelia.link/theoryfellow... #computationalbiology

Winter is coming in Leesburg near @hhmijanelia.bsky.social

This is a dream job position for a small but not insignificant portion of you, probably!

We have to go buy toilet paper, the aliens are coming!!! This will be worse than Covid …

Congratulations Ana, this is amazing!

Fenestrae are unusual holes in hepatic endothelia cells. Here they are in a data set from OpenOrganelle, reconstructed by Aubrey Weigel and the CellMap team at #HHMIJanelia. This video was rendered in #Blender driven by neuVid (which has been helpful for #CellBiology as well as #Neuroscience).

Winter sunsets are the best. Did I mention that the Champalimaud PhD program just opened for applications and that the lab has an open postdoc position in metabolism?

That's why it is really important to avoid consecutive interpolations of your image when reconstructing your data. Try to use software that combines all transformations you need to apply to your images into a single interpolation operation.

Quantum computers are going to be a very-very-big-thing™️ blog.google/technology/r...

In a new review, Group Leaders @computingnature.bsky.social & @marius10p.bsky.social examine methods for analyzing large-scale neuronal recordings, how these tools have enabled progress in answering longstanding questions in neuroscience, and what advances & challenges lie ahead. hhmi.news/3Di0Bcz

I could not be more thrilled to announce the Nature Methods @naturemethods.bsky.social Method of the Year is Spatial Proteomics! Please see our editorial as a roadmap to the fantastic content in this special issue! www.nature.com/articles/s41...