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senger.bsky.social
Mechanobiology / Multi-cellular assemblies
330 posts 689 followers 319 following
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Come and work with us! Super exciting and relevant projects! Become an #AI pro and do something positive for the 🌍! 👩‍🎓 🧑‍🎓 If you know someone who might be interested… please repost and/or forward this! 🙏

New ‘How to’ post on FocalPlane 🔬💻 Lea Kabjesz shares a step-by-step guide to get you started annotating 2D and 3D images in Cellpose, including video tutorials. focalplane.biologists.com/2025/06/05/a... #bioimageanalysis #cellpose #imaging #HowTo

Waouw... Some testing ahead

Segment any MRI, CTscan, histology, transcriptomic image using CODA using Prof. Kiemen's CODAvision. CODAvision enhances the usability of the CODA algorithm to automatically generating quantitative results and comprehensive reports. More here: www.biorxiv.org/content/10.1...

Hydrogels are essential in mechanobiology—and PIC is a game changer. Fully synthetic yet highly biomimetic, PIC opens new possibilities for 3D cell culture applications. Congrats to Hongbo Yuan, Kouwer Lab, and rochalab.bsky.social on this detailed Nature Protocols guide! 👏📜

Out today in @natmethods.nature.com : Spotiflow, our transcript localization method for imaging-based spatial transcriptomics. Led by amazing PhD student @albertdm.bsky.social, joint work w @gioelelamanno.bsky.social at EPFL / @scadsai.bsky.social www.nature.com/articles/s41... rdcu.be/epIB7

I can't wait to be there

Exciting news from France-BioImaging! 🇫🇷 We’re proud to announce the official integration of our two new cutting-edge imaging Nodes, Normandie and Rhône-Alpes, into the French Node of Euro-BioImaging! 🔬

Modelling bulk mechanical effects in a planar cellular monolayer arxiv.org/abs/2505.23935

📣 A new blog on the use of web apps versus 'vibe coding' for creating plots of your data: thenode.biologists.com/visualizing-...

Inkscape plugin to rescale figures without distorting the text, and other useful features! github.com/burghoff/Sci...

I'm thrilled to finally share my PhD work on understanding how Ca2+ signals regulate the protruding front of the cell. It’s been an incredible journey working alongside all the collaborators. www.biorxiv.org/content/10.1...

E11 Bio is launching Volara: an open-source Python library for block-wise processing of large volumetric microscopy datasets! 🧪🔬 Volara features block-wise task abstractions, making scalable image processing more accessible, robust, and repeatable. Read more: e11.bio/blog/volara

Can we break past the usual limits of #SuperResolution #Microscopy—achieving deep-imaging, high-res, large FOV imaging without the trade-offs? 🧬🔬 YES: with #DNA_PAINT + Spinning Disk Confocal + Optical Photon Reassignment (#SDC-OPR)! 📄 www.nature.com/articles/s41... @natcomms.nature.com! 🧵👇

Modulation of Filopodial Myosin Function https://www.biorxiv.org/content/10.1101/2025.05.29.656896v1

The cellular dance that splits vessels Really appreciate this insightful commentary by Dr. Lance Munn on our recent paper @pnas.org using Microvessel-On-A-Chip to model the pillariogenesis during early #IntussusceptiveAngiogenesis 😎 pnas.org/doi/abs/10.1073/pnas.2508260122

📣 Preprint alert! We developed a framework to uncover Coherent Structures in flows on dynamic surfaces—revealing dynamic attractors, repellers and deformation directions in nematic vesicles, pancreatic spheroids, and beating zebrafish hearts. @sreejithsanthosh.bsky.social biorxiv.org/content/10.1...

Thank you Rita. Very proud of this work, co-led by PhD students Saurabh Joshi and André Forjaz.

Barcares wo tourists, almost

Shaping epithelial tissues by stem cell mechanics in development and cancer www.nature.com/articles/s41...

Want to host your own AI models without relying on external infrastructure? Enter BioEngine ai4life.eurobioimaging.eu/announcing-b... Your go-to for flexible, self-hosted bioimage analysis. Open source, scalable, and built for you!

Did you know that Bioimage Archive has a specific database for people to share AI-ready imaging datasets? I did not until @yanlanmao.bsky.social told me! Please deposit! If people regularly submitted, it would have a huge collective impact on bioimage analysis. www.ebi.ac.uk/bioimage-arc...

Transducing chemical energy through catalysis by an artificial molecular motor Peng-Lai Wang, Stefan Borsley, Martin J. Power, Alessandro Cavasso, Nicolas Giuseppone & David A. Leigh Nature 637, 594–600 (2025) www.nature.com/articles/s41...

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This is my favorite

IMHO à fantastic introduction to this subject

Near-infrared spatiotemporal color vision in humans enabled by upconversion contact lenses www.cell.com/cell/fulltex... 😮

Can't miss this cool paper that came online while I was away! This set of rhodamine dyes is incredibly versatile for bioimaging. Check out the paper and see if want to try them with your HaloTag-labeled proteins!