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binomicalabs.org
Binomica Labs independent researcher by day, warehouse worker by night Small thoughtful science #phylogenetics #archaea #sequencing #bioinformatics @[email protected] http://naturepoker.wordpress.com https://orcid.org/0000-0002-6977-5440
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A really useful resource

🚨 Our GW paper is out in Nature Methods!🥲 GW is a fast genomics browser (up to 100x faster!) github.com/kcleal/gw Also, just released a Python interface for GW github.com/kcleal/gwplot 📝 nature.com/articles/s4159… #Genomics #Bioinformatics

Oof. You can't even log in to USCIS site with #firefox anymore. Having a chrome installation in the background is increasingly becoming necessary to get work done. It's going back to IE era all over again :(

Happy #WorldMicrobiomeDay! 🦠 If you are a starter in this field, as I was until recently, here are some highly recommended articles from @natmicrobiol.nature.com that may help you understand, plan, and even improve your microbiome studies - A starter pack you might say! 😊🧵 #MicrobiomeSky #MicroSky

Preprint🚨 #microsky 🦠 “Cultivation of Methanonezhaarchaeia, the third class of methanogens within the phylum Thermoproteota”, authored by @kohtzarchaeota.bsky.social & Sylvia Nupp, expands the diversity of methanogens! 90% enriched, methylotrophic culture from a hot spring. A 🧵 tinyurl.com/yw8ku2bj

The Society has supported the microbiology community for 80 years. Now we invite you to get involved by submitting your research, helping to shape the future of science and innovation. Publish with us - microb.io/Publishing-f...

Jeez. The heatwave in NYC is brutal. It's actually a bit hard to breathe in the lab 🫠

Ethical scientific journals and where to find them....here is DAFNEE, a #database of non-profit journals in #Ecology and #Evolution #EvoBio, to choose an ethical place where to publish your next articles! (1/2) dafnee.isem-evolution.fr 🧪 #science

I gotta tell ya folks, I felt like such a city bumpkin taking all those photos of wide open fields in Kansas while oohing and ahhing.

#OpenScience lobbyists, skeptics and everything in between: consider coming to Munich in May 2026 (gorgeous time to visit..) to discuss the future of Open Research! FOR2026 is open for submissions: opensciencestudies.eu/for-2026-con... pls help spread the word 🙏 #philsci #sts #methods #policy 🧪

The ASM journey took me from NY to Chicago to LA overland, trailing tornadoes, downed power lines and ending with a burning engine at the entrance to the Mojave desert, where we hitched a ride on a bus and vaulted some fences to catch the last tram out of Union station. Took some good photos though!

You have no idea how happy I was to find this at some random bodega in Queens. It's like watching civilization progress one step at a time.

Whoa Mamdani actually won the #NYC primary. I never thought I'd live to see the day the machine politics in NYC loses out. Very excited

plz read will's entire bluetorial 🧵 and enjoy the time lapse images. next, snowflake yeast will move to NASA's JPL... #MicroSky #FungiFriends 🧪

Good to see the airport staff has a sense of humor

A process server delivered a letter regarding my "hostile" and "defamatory" attacks on #ColossalBio co-founder Ben Lamm, insinuating I'm a misogynist and a failed scientist. Nothing I've said is defamation, but you can read it a judge for yourself. I've redacted my home address 1/n

For ANME enthusiasts & for those who wonder how a methanogen turns into a methanotroph 👇New work by Orphanlab Identification of key steps in the evolution of anaerobic methanotrophy in Candidatus Methanovorans (ANME-3) archaea www.science.org/doi/10.1126/... @caltech.edu @mblscience.bsky.social

As bone broke as I am right now, I'm sorely tempted. IMHO a great opportunity to pick up what will be a piece of scifi-cyberpunk cultural ephemera of our moment in time. Still kicking myself for giving up that Mondo2k collection from a friend of mine.

Why is it always the singularity/h+ offshoots that turn creepy/violent when things don't go their way? I've known my share of old, burnt out Mondo2k readers and Usenet ranters who used to argue with bruces or greatdismal - they're perfectly fine, maybe even great weirdos.

#ColossalBio shouldn't be blaming the less-than-glowing outcome of their weird (outdated?) PR strategy on researchers merely doing their jobs. Regardless of your personal take, this is a dangerous pattern of behavior 🧪

🖥️🧬

Nice! Looking into low biomass samples for next year's project too. 🦠🧫

I tried going through LA metro (LA's tram/subway equivalent) and their brand new LAX transit hub that opened up just this month, skipping the usual Union station bus ($12 something). E to Expo/Crenshaw and transfer to K, then free 10 min shuttle to LAX. $1.75 for an hour trip. Not bad!

Oh goodness one bottle of Snapple is 85% of daily recommended sugar for an adult. I don't want to spend all my daily sugar allotment on this crap.

Last day in LA. Glad I could take a quick detour at the natural History museum! @markowenmartin.bsky.social

New pre-print alert! 🚨🫁 COPD affects millions worldwide. While we know bacterial dysbiosis drives disease, the role of bacteriophages remains unexplored. We re-analysed 135 COPD metagenomes to characterise the lung virome for the first time 🫁 1/9 www.biorxiv.org/content/10.1...

Aw darn it, the MoCA closes on Mondays. I really wanted to check out the Rothko room before leaving LA 😔

I've got to hand it to LA, the weather is fantastic here. Sunny like May, Autumn-cool in the evenings. I don't know why anyone would ever stay inside.

A great thing about a gigantic conference like #ASMicrobe is the diversity of represented interests - which makes it far easier to figure out what niche my current focus generally falls under. For me, when in doubt checking out an EEB poster or session worked out perfectly.

Researchers want overhead-payment reforms—NOT drastic cuts that would devastate research. Their ask: Protect indirect-cost funding, safeguard labs, avoid drastic drops in medical, climate, and tech innovation. zurl.co/ffIm2 #StandUpForScience #HigherEd

More people should stop by EEB-SUNDAY-1139 - Mining the ATCC Genome Portal: Genomic Insights into Unsequenced Taxa and Rare Historical Strains in the American Type Culture Collection, and talk to Scott. Treasure trove of microbial info there, forgotten human records and cells alike #asmicrobe 🦠🧫

Absolutely delighted by the morning's talk- Geovirology: Bacteriophage influences on bacterial geochemical signatures by Cynthia Silveira, University of Miami That IV bag-glove box setup for studying PSB samples was amazing. Also, viral/bacterial geological records? Wow #asmicrobe

First podcast experience of my life done - that was fun! Much thank you to Karl for the and the podcast crew for being so considerate. #asmicrobe

Alright fellas. Come one come all, #amateurbiology poster presentation at #asmicrobe on our first set of methylation screening results on Halococcus. Come ask about an exciting new finding I couldn't put on the poster! #archaeasky EEB 1147 🧪🧫🦠

Defining ultra-slow-growing extremophilic microorganisms as aeonophiles #USC_earth #USC_MEB #jcampubs www.nature.com/articles/s41...

One tip that'll be useful at conferences (incl. #Evol2025): when a group of people are talking, make a "C", not a circle -- leave a little gap so others walking by can feel like they can join in. Small, inclusive gesture, and lets you meet cool new colleagues.

@asm.org our booth at #ASMicrobe is empty because our comms team was fired. We oppose the damage to NIH-funded research and the people who do it. Please show your support by signing the #BethesdaDeclaration. #Microbe #Microbe2025 www.standupforscience.net/bethesda-dec...

I am giving two presentations here at #ASMicrobe. Saturday, 2:45PM, to talk about "shock and awe" experiments that will really resonate with students. Sunday, 10:35AM, #MattersMicrobial Episode 99 with Dianne Newman to chat about Albert Kluyver and microbial history! Hope to see you there!

Standout talk of the morning so far: Plasmid-mediated multi-species biofilms in the gut microbiota Leonor Garcia-Bayona, Stanford University Extremely conserved 98kb plasmid across multiple species spanning wide taxa. Fascinating stuff! #asmicrobe

Pretty sweet view from the lodging for ASM!

I have to say, that keynote from Dr Margie Lee should be a required viewing for all students. Amazing, heartfelt talk on the need for reform within #asmicrobe2025

Hi #ASMicrobe go-ers!! I am convening a session tomorrow @8:15am PDT! (I may be half asleep bc my ✈️ gets in at midnight) This session is about metal homeostasis in environmental 🦠 and includes topics like lanthanide metabolism, cable bacteria, Mn-oxidizing fungi, metal stress, and more! #MicroSky