danilexn.bsky.social
Open-ST • Computational Modeling of Spatial Omics @mdc-berlin.bsky.social • PhD Candidate
Occasional composer and pianist • he/him
https://rajewsky-lab.github.io/openst
58 posts
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Thanks! 😊
Also, fantastic poster of yours!
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Welcome address: Holger Gerhardt
Speakers: Ulf Landegren, Daniel Léon Periñán @danilexn.bsky.social, Camille Marchet @camillemrcht.bsky.social
Chair: Juliana Roscito
#BSM2025 #mdcBerlin
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El tipo claramente no ha apagado la enciende
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www.reuters.com/world/middle...
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Bonsai: Tree representations for distortion-free visualization and exploratory analysis of single-cell omics data
by @erikvannimwegen.bsky.social and colleagues:
www.biorxiv.org/content/10.1...
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Yes, I know that every single paper in this field disclaims that it is for hypothesis generation only. I do not want to generate hypotheses; I want answers, and I want them to be correct. What I don't want them to be is wrong on account of the author is contemptuous or unaware of non-TF mechanisms.
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(And C++)
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Just casually (pre)processing 12,665 10x single-cell libraries
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Classic “we can distinguish T cells from B cells!”.
Well…
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It’s also interesting that many who create/train these models have never created or deeply analyzed a sc/spatial dataset.
They often ignore all sorts of biases&limitations of the techs, using public datasets blindly (little QC performed)
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All was preprocessed from scratch with the same pipeline