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ronbeavis.bsky.social
Doing science for money since 1981. Putting it online since 1995. Does not engage in cancer research. QA >> QC I enjoy doing things I am not very good at doing.
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If youre new to this rodeo: there is no country which is in a position to really take advantage of this. Canada does not substantially underperform Europe/Japan /Korea/Oz in terms of recent HE investments. China is *maybe* a partial exception but has other things going against it as a destination.

A blob of potentially unpleasant weather is making its way through Dixie at the moment.

Are the lysosomal enzymes that appear in urine & CSF secreted separately or is there a little bag manufactured in some cell types that serves as a secretory equivalent of a lysosome?

Iduronate 2-sulfatase (IDS:p) rips the sulfate groups off the iduronate moieties in heparin or dermatan sulfate in lysosomes. #proteomics ✔ 33 aa signal + propeptide ✔ no observed PTMs; ✔ observable in urine or CSF; & ✔ AF structure with imaginary N-terminal tail.

Alpha-L-fucosidase 1 (FUCA1:p) is a lysosomal exoglycosidase that is part of that organelle's complex carbohydrate wrecking crew. #proteomics ✔ 31 aa signal peptide ✔ no observed PTMs; ✔ plenty to see in urine; & ✔ AF structure complete with fantasy signal peptide.

L’administration Trump retire à l’université Harvard le droit d’accueillir des étudiants étrangers, et demande le transfert des milliers d’élèves actuellement concernés

Moderna pulls application for U.S. approval of COVID-flu shot globalnews.ca/news/1118962... @reuters.com 𝗠𝗼𝗿𝗲 𝗵𝗲𝗮𝗹𝘁𝗵 𝗻𝗲𝘄𝘀 ⇢ CanadaHealthwatch.ca 🍁

The Trump administration is blocking Harvard from enrolling any international students, and I would expect this to be extended to at least the Ivies and possibly beyond over the next several weeks. This is a big move.

You will all be receiving a single mandate letter from me soon.

Mannosidase beta (MANBA:p) is a lysosomal exoglycosidase that pops mannose off N-linked glycosylation like candy from a Pez dispenser. #proteomics ✔ 18/19 aa signal peptide ✔ no observed PTMs; ✔ commonly found in urine; & ✔ AF structure with a non-existent signal peptide.

reproducible.cs.princeton.edu

GM2 ganglioside activator (GM2A:p) is a lysosomal co-enzyme that grabs some gangliosides so that β-hexosaminidase A can remove their HexNAc's. #proteomics ✔ 23 aa signal peptide + 10/11/12 aa propeptide; ✔ no significant PTMs; ✔ lots in urine; & ✔ AF structure with a phony signal/pro peptide.

Oof. Truth.

The soil temperature has gotten in to the range where some garden crop seeds (beets, chard, peas, radishes, parsley) will germinate. #winnipeg

N-sulfoglucosamine sulfohydrolase (SGSH:p) is a lysosomal enzyme that chops sulphates off things like heparin sulphate. #proteomics ✔ 20 aa signal peptide; ✔ a smidge of PTMs; ✔ abundant in urine; & ✔ AF structure with a mirage N-terminal signal peptide.

#proteomics tip: if you want to find high occupancy S/T+phosphoryl acceptors, you can't go wrong looking for S/T residues wedged between short low complexity regions with different side chain charges. If there are a few prolines scattered around, it's a party! PRPLKKRSSITEPEGPG

Spain's consumer rights ministry blocks more than 65,000 Airbnb listings for holiday rentals Authorities blame Airbnb for exacerbating housing shortages and pushing up real estate prices www.cbc.ca/news/world/s...

Hexosaminidase subunit alpha (HEXA:p) is a lysosomal enzyme that bites terminal N-acetyl hexosamine (e.g. GalNAc) off complex carbohydrates. #proteomics ✔ 22 aa signal peptide; ✔ very lite on PTMs; ✔ common in urine; & ✔ AF structure with phantom N-terminal signal peptide.

In these uncertain and turbulent times, it's reassuring to know that we can count on the Maple Leafs to collapse in the playoffs, right on schedule.

This week, the GOP slid an amendment into the budget reconciliation process that would ban US states from enacting laws that govern AI. This of course was not an aberration—it’s the direct result of Silicon Valley lobbying efforts, and big tech’s union with Trump and the Republican Party.

Another great cartoon worth sharing ...

www.halifaxexaminer.ca/commentary/a...

Lipase A, lysosomal acid type (LIPA:p) is a lysosomal enzyme that turns low density lipoprotein particles into free lipids. #proteomics ✔ 27 aa signal peptide & 49 aa propeptide; ✔ hint of PTMs; ✔ very rare in urine; & ✔ AF structure with a spectral N-terminal signal peptide.

It should be clear by now that "just apply for more grants" cannot be considered good advise much longer. What do other institutions discuss re: how to support pre-tenure (and post-tenure) to meet the grant requirement or, quite frankly, to continue running their labs?

Literally, all the early career funding opportunities are going away or being drastically reduced, and people are still saying “apply for more grants” to those whose grants were terminated 🤷🏾‍♀️

“innovation”

It periodically annoys me that this system does not allow editing of posted blurbs.

Aspartylglucosaminidase (AGA:p) is a lysosomal enzyme that bites off N-linked glycosylation at the Asp sidechain. ✔ 23, 24 or 26 aa signal peptide (ragged N-terminus); ✔ light smatter of PTMs; ✔ frequently observed in urine; & ✔ AF structure with the ghost N-terminal signal peptides past.

Seems to be quite a bit more potential for seeing the #aurora than I was expecting this evening.

“Americans die earlier and are sicker than people in other high-income countries. This has been true for a long time, and the trend is getting worse.” gift link www.wsj.com/health/welln...

Summer's over, back to fall weather. #winnipeg

The US Army is getting in on right-to-repair