A pre-trained SCVI model of our Tahoe-100M cell atlas is now available as a HubModel! It can be used for gene expression visualization, differential expression, or cell clustering. Available at Hugging Face with instructions on how to load it (see thread)
Comments
60k drug*cell line interactions sounds quite complex. Have to tried training a much larger model?
Eg n_hidden=1024-4096, n_latent=256-1024.
Increasing model size substantially helped with preserving bio differences in several of our projects.