nxn.se - Profile | ThreadSky | a Reddit-style client for Bluesky

SCVI — Integrating or not? - www.nxn.se/p/scvi-integ...

submitted 6 days ago • 0 comments

Deep Learning is Not So Mysterious or Different - arxiv.org/abs/2503.02113 Section 8, listing properties unique to neural networks, is quite interesting.

submitted 6 days ago • 0 comments

Half-Life - www.filfre.net/2024/12/half...

submitted 7 days ago • 0 comments

After some months of lurking, finally launching my bsky account with my completed Lifetime Achievement Award #animation! Song by @neilcic.com #lemondemon #spiritphone I don't even gotta tell u CW for mild body horror & flashing colors

submitted 13 days ago • 8 comments

Strange New Rules - protocolized.summerofprotocols.com/p/strange-ne...

submitted 11 days ago • 0 comments

Discworld Rules - contraptions.venkateshrao.com/p/discworld-...

submitted 13 days ago • 0 comments

A pre-trained SCVI model of our Tahoe-100M cell atlas is now available as a HubModel! It can be used for gene expression visualization, differential expression, or cell clustering. Available at Hugging Face with instructions on how to load it (see thread)

submitted 17 days ago • 1 comment

RNA xkcd.com/3056

submitted 25 days ago • 162 comments

Cloud GPUs for SCVI - www.nxn.se/p/cloud-gpus...

submitted 18 days ago • 0 comments

The strength of a hand - www.nxn.se/p/the-streng...

submitted 21 days ago • 0 comments

#scRNAseq to the next level: www.biorxiv.org/content/bior.... Mindbogglingly 100M cell large dataset involving 50 cancer cell lines and 1,100 molecule perturbations 🤩 — an absolute feast for the data-hungry ML/AI field, poised to advance cell understanding and modeling.

submitted 23 days ago • 1 comment

Over a 1000 compounds :0 www.biorxiv.org/content/10.1...

submitted 25 days ago • 1 comment

This is huge! Single-cell transcriptomic data from over 100 million cells belonging to 50 different cancer cell lines that were subjected to more than 1100 pharmacological agents. Waiting to see the predictive models that will result from this initiative. #singlecell doi.org/10.1101/2025...

submitted 25 days ago • 1 comment

Amazing working with this team!

submitted 26 days ago • 0 comments

AI 🤝 Biology Tahoe-100M, the largest single cell dataset ever generated, has just been open-sourced as part of the @arcinstitute.org Virtual Cell Atlas Initiative in partnership with @vevotherapeutics.bsky.social We're excited to see how this transforms the use of AI in biology!

submitted 26 days ago • 0 comments

Exciting dataset! If you're looking for a complimentary scRNA-seq drug perturbations in healthy/primary tissue (PBMCs), check out our dataset with ~36% # drugs of Tahoe. proceedings.neurips.cc/paper_files/...

submitted 26 days ago • 0 comments

It is always exciting when I have to adjust the y-axis limits of this plot, but extra special this time having been part of this project at @vevotherapeutics.bsky.social! tinyurl.com/vevo-tahoe100

submitted 26 days ago • 0 comments

@thejohnnyyu.bsky.social, @therealnima.bsky.social, and I, are excited to tell you about Tahoe-100M! The largest publicly available single-cell dataset that measures the effect of 1200 genes on 50 cell line models. The Vevo team has outdone itself. #Tahoe100M www.biorxiv.org/content/10.1...

submitted 26 days ago • 1 comment

Watch @thejohnnyyu.bsky.social @therealnima.bsky.social (@vevotherapeutics.bsky.social), @pdhsu.bsky.social , Dave Burke and I (@arcinstitute.org) talking about virtual cells, and how #Tahoe100M, now on. @arcinstitute.org's Virtual Cell Atlas, can change the game! www.youtube.com/watch?v=ak_f...

submitted 26 days ago • 0 comments

🎉 Scanpy 1.11.0 is out! 🎉 just after reaching 2000 stars on GitHub! - sc.pp.sample replaces subsample with many new features - Sparse Dask support pca - session-info2 package for more reproducible notebooks See the release notes:

submitted 37 days ago • 1 comment

Join us Tuesday at 2025-02-18 18:00 CET! Marius Lange will speak about Moslin, a new algorithm to map cells across time and lineage. For more information, check out the GitHub: https://buff.ly/4hTO522 & publication: https://buff.ly/41gcQzZ

submitted 37 days ago • 1 comment

"Anything threatening to be a subculture is commodified before it can walk" - www.dezeen.com/2014/12/18/w...

submitted 48 days ago • 0 comments

Vevo Therapeutics 💙 NVIDIA Healthcare 💙 Open Source. And we love making history with other like-minded organizations. Thanks Parse Biotechnology for GigaLab, without which this would not have been possible. And to Ultima Genomics for the support. Press Release: www.prnewswire.com/news-release...

submitted 67 days ago • 0 comments

A month ago we @vevotherapeutics.bsky.social announced that we have generated the largest single-cell perturbation atlas in history, Tahoe-100M. Today, we announce that we will fully open-source Tahoe-100M in Feb, as part of a collaboration with NVidia health to train cell state models.

submitted 69 days ago • 4 comments

Metacrap: Putting the torch to seven straw-men of the meta-utopia - people.well.com/user/doctoro... The examples are an interesting trip down memory lane of technological and cultural issues in August 2001

submitted 79 days ago • 0 comments

After 4y in the making, I am super excited that my main PhD project is published 🎉🥳🎉🎉🥳 www.nature.com/articles/s41... LEMUR is a tool to analyze multi-condition single-cell data and model differential expression as a continuous function of the cell-state space. Some highlights⬇️

submitted 79 days ago • 8 comments

Every cell in our body is unique. EMBL researchers have developed a statistical tool – LEMUR – to compare tissues and organisms using single-cell RNA sequencing and use it for applications in human health and fundamental biological research. #AcademicSky 🧬🧪 www.nature.com/articles/s41...

submitted 79 days ago • 2 comments

Ralph M. Steinman: A man, a microscope, a cell, and so much more - www.pnas.org/doi/full/10....

submitted 79 days ago • 0 comments

Image analysis should be so easy now that PowerPoint / Keynote should have features to automatically detect lines, font sizes, baselines, indents, etc., to align pasted images correctly on the fly.

submitted 97 days ago • 0 comments

I was just looking at our @scverse.bsky.social zulip chat statistics and am super happy about our steady and healthy growth. The two bursts are our official launch in May 2022 and the inaugural scverse conference in September of 2024. Please join us! scverse.zulipchat.com

submitted 98 days ago • 0 comments

I made some boxes to store some Nikon lenses - makerworld.com/en/models/86...

submitted 100 days ago • 0 comments

To build disease-relevant models of the cell, we need perturbative data at scale + AI that can efficiently learn from that data. @vevotherapeutics.bsky.social may be the only team that is pushing the boundaries of both. This recognition from DataBricke is a testament to that dbricks.co/3DbIULQ

submitted 102 days ago • 1 comment

Parse Bio GigaLab and Vevo Therapeutics Tahoe-100 experiment open.substack.com/pub/albertvi...

submitted 107 days ago • 2 comments

We 💙 Single-Cell Data. So we built an atlas of it that goes beyond anything available publicly by a wide margin. Proud of our team! And thanks Parse Biosciences and Ultima Genomics for the support.

submitted 108 days ago • 0 comments

@thejohnnyyu.bsky.social, @therealnima.bsky.social , Kevan Shokat, and I are excited to announce a historic achievement by our team at @vevotherapeutics.bsky.social: tinyurl.com/4rrvap3t

submitted 108 days ago • 4 comments

Timescales in Cell Biology

submitted 112 days ago • 8 comments

I made an extension hood for a cheap spotlight: makerworld.com/en/models/83...

submitted 114 days ago • 0 comments

A meditation on all the small, nearly unconscious tasks and motions that you go through doing lab work. These were just off the top of my head, and there are plenty more (additions encouraged in the comments!)

submitted 122 days ago • 6 comments

I made a cupboard riser shelf for old fashioned glasses: makerworld.com/en/models/80...

submitted 125 days ago • 0 comments

Immune response enrichment analysis in Python - www.nxn.se/valent/2024/...

submitted 405 days ago • 0 comments

Single-cell metadata as language - www.nxn.se/valent/2024/...

submitted 412 days ago • 1 comment

Organizing scRNA-seq data with LaminDB - www.nxn.se/valent/2024/...

submitted 417 days ago • 0 comments

Detecting scRNA-seq study duplicates using sentence embeddings - www.nxn.se/valent/2023/...

submitted 479 days ago • 0 comments