Our new GenSpectrum.org dashboard has finally launched! Using Influenza H5N1, RSV and SARS-CoV-2 data from INSDC and West Nile virus data from @pathoplexus.org, it enables fast and interactive analyses of genome sequencing data similar to CoV-Spectrum. 1/5 - ThreadSky

chaoranchen.de • 100 days ago

Our new https://GenSpectrum.org dashboard has finally launched! Using Influenza H5N1, RSV and SARS-CoV-2 data from INSDC and West Nile virus data from @pathoplexus.org, it enables fast and interactive analyses of genome sequencing data similar to CoV-Spectrum. 1/5

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lmn24.bsky.social•100 days ago

📌

josetteschoenma.bsky.social•100 days ago

Great job!
CovSpectrum has not been working the last few weeks though.

chaoranchen.de•100 days ago

Thanks @josetteschoenma.bsky.social! Regarding CoV-Spectrum: that's not suppose to happen, sorry! Which page are you accessing exactly and do you see any error message?

josetteschoenma.bsky.social•100 days ago

In used the link you provided this time.

josetteschoenma.bsky.social•100 days ago

It doesn't matter what I search for or where, it just looks like it's searching and nothing shows up. No error message. Others get this as well.

chaoranchen.de•100 days ago

This is strange and I can't see what is causing this. Would you mind providing a few additional information? (1) Have you tried it from different devices? (Laptop? Phone?) (2) Have you tried it from different locations/networks? (3) Could you please try deleting the cache? Thank you very much!

josetteschoenma.bsky.social•100 days ago

It seems to work fine from my laptop. So, not from my mobile. I know that others had some trouble the last couple of weeks as well. I will look if I can find out how to empty cache

chaoranchen.de•100 days ago

In the "Analyze a single variant" view, you can query a variant by lineage and mutations and see its spatio-temporal distributions and mutations (over time). The "Sequencing efforts" view displays the number of sequences, their geographic origins and the contributors 2/5

chaoranchen.de•100 days ago

We also offer a Loculus instance with H5N1 and RSV data from INSDC, providing a new website and API to access the data. You can find both aligned and unaligned sequences and lineage annotations. For H5N1, the sequences from different segments have been linked together. https://loculus.genspectrum.org 3/5

chaoranchen.de•100 days ago

Our tool is of course fully open source. Please let us know if you have any feedback or a suggestion for what should be added (feature or pathogen) or improved. You can create an issue in our GitHub repository: https://github.com/GenSpectrum/dashboards 4/5

chaoranchen.de•100 days ago

We would like to thank all the data generators for making their data openly available, @ethzurich.bsky.social, the US CDC and the Office of Advanced Molecular Detection (OAMD) for funding and the whole team (https://github.com/GenSpectrum#contributors-) for the amazing work! 5/5

nancylin.bsky.social•68 days ago

I think this would be very helpful in analyzing the virus Are you a doctor?😊

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