I am preparing a talk on #OpenScience and looking for examples/studies quantifying non-openness, closed workflows, data code etc. Like this one on Excel errors in gene names per journal #science Can you recommend other good example? - ThreadSky

jekely.biologists.social.ap.brid.gy • 37 days ago

I am preparing a talk on #OpenScience and looking for examples/studies quantifying non-openness, closed workflows, data code etc.
Like this one on Excel errors in gene names per journal #science
Can you recommend other good example?

Comments

mdziemann.genomic.social.ap.brid.gy•34 days ago

@jekely Sorry to toot my own horn, but this may be relevant
https://pubmed.ncbi.nlm.nih.gov/35263338/

grimaldi.bsky.social•37 days ago

There are a few papers on quantifying data FAIRness (findable, accessible, interoperable, re-usable) in research, e.g. https://www.biorxiv.org/content/10.1101/657676v1.full.pdf

grimaldi.bsky.social•37 days ago

🧪 (cross posting to science feed)

jekely.biologists.social.ap.brid.gy•34 days ago

My #OpenScience talk is ready, thanks to all for the suggestions.
You can see the slides here:
https://jekelylab.github.io/ELTE_Open_Science_28Jan2025.html#/title-slide

kirk.social.coop.ap.brid.gy•34 days ago

@jekely this is my new fav gif thank you (and very nice presentation!)

jrhawley.scholar.social.ap.brid.gy•34 days ago

@jekely This is a great presentation. I especially love the call to action for labs and research institutions to take back ownership of their publications mechanisms in a way that is still interoperable with others. Researching, implementing, and sustaining federated and transparent tools that […]

jekely.biologists.social.ap.brid.gy•34 days ago

@jrhawley Thanks. For us this has been such a massive reduction in 'publication stress' (since about 2017)! The benefits on our mental health I think are significant (no cycles of rejection) and we can focus more on the science (not on spinning it).

crisprflydesign.bsky.social•34 days ago

📌

atomant-wirr.bsky.social•36 days ago

@goatswhostare.bsky.social
Maybe you can help and I think collab would be great.

goatswhostare.bsky.social•35 days ago

@asanchez-tojar.bsky.social has published neat work on this topic, e.g.:

https://journals.plos.org/plosbiology/article?id=10.1371/journal.pbio.3000763
https://ecoevorxiv.org/repository/view/8173/

goatswhostare.bsky.social•35 days ago

We are also in the process of screening the animal behaviour literature for open data statements - but this is far from complete.

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