azusakage.bsky.social - Profile | ThreadSky | a Reddit-style client for Bluesky

Reposting our microPublication now indexed in PubMed: We analyzed the movement of the unicellular green alga Chlamydomonas using #DeepLabCut, a deep learning-based tracking tool originally developed for animal behavior studies. pubmed.ncbi.nlm.nih.gov/40331205/ Original videos: 🧵 #protistsonsky

submitted 26 days ago • 1 comment

Reposting our microPublication now indexed in PubMed: We analyzed the movement of the unicellular green alga Chlamydomonas using #DeepLabCut, a deep learning-based tracking tool originally developed for animal behavior studies. pubmed.ncbi.nlm.nih.gov/40331205/ Original videos: 🧵 #protistsonsky

submitted 26 days ago • 1 comment

Spring in northern Japan🌸

submitted 29 days ago • 0 comments

Our analysis of the rotational movement of Chlamydomonas uniflagellar mutant using #DeepLabCut has just been published in microPublication Biology! micropublication.org/journals/bio...

submitted 41 days ago • 1 comment

Our analysis of the rotational movement of Chlamydomonas uniflagellar mutant using #DeepLabCut has just been published in microPublication Biology! micropublication.org/journals/bio...

submitted 41 days ago • 1 comment

Oxygen gradients shape E. coli motility patterns as they run away from O2! - 😍

submitted 93 days ago • 1 comment

Asked similar question before but I try again. Anyone knows proteins that localize like this? This protein is present in diplonemids/bodonids/euglenids/Naegleria, which have two flagella, but not in trypanosomatids that have just one flagellum. Potentially interesting for flagella/cilia community?

submitted 121 days ago • 8 comments

We have posted our new #preprint regarding the track recognition mechanism of dynein-2 that works in #cilia on bioRxiv @biorxivpreprint.bsky.social!! www.biorxiv.org/content/10.1... 1/8 🧵

submitted 125 days ago • 1 comment

Dynein-2 is tuned for the A-tubule of the ciliary doublet through tubulin tyrosination https://www.biorxiv.org/content/10.1101/2025.01.27.635025v1

submitted 126 days ago • 0 comments

【青山たけしSNS】いつもSNSをチェックいただきありがとうございます Xでの発信をメインとしてますが Instagramも 2000名近くの方に閲覧いただく（Xとは若干内容が異なります） Threadsに加えて新たに Bluesky bsky.app/profile/aoyama… をはじめました今後も室蘭の情報発信を続けます

submitted 140 days ago • 0 comments

Proud to be part of this paper published in @naturecomms.bsky.social. Using high-speed AFM, we have visualized the real-time translocation of substrate polypeptide by the single molecule of SecYEG-SecA!!! Please check this amazing video taken by high-speed AFM!!! www.nature.com/articles/s41...

submitted 145 days ago • 0 comments

Happy New Year from the northside of Japan🌅🎍❄️

submitted 153 days ago • 0 comments

New Year decorations at our lab🎍

submitted 159 days ago • 0 comments

Did you know #diatoms are motile? These tiny glass cells have no cilia or flagella and a rigid body yet can glide on surfaces using a specialised slit in the cell wall called the raphe! What is the functional morphology of the raphe? All revealed in our new preprint www.biorxiv.org/content/10.1...

submitted 161 days ago • 5 comments

International Society of Protistologists is funding two symposia at the 16th International Congress of Protistology in Seoul, South Korea. Proposals are due 30 January 2025 #protist #protistsonsky protistologists.org/programs/fun...

submitted 165 days ago • 1 comment

🍾Our small #UExM adventure is only starting! #ProtistsOnSky We are happy to announce that the Moore Foundation will be funding our efforts in creating an Expansion Microscopy atlas of #Microbial #Eukaryotes with @gautamdey.bsky.social @UNIGE @embl.org LINK: www.unige.ch/sciences/chi... 1/4

submitted 167 days ago • 12 comments

📢 Please re-share! New Preprint Alert -- in collaboration w/ @prannoysuraneni.bsky.social @coralprof.bsky.social and others @univmiami.bsky.social @miamirosenstiel.bsky.social FlumeX: A Modular Flume Design for Laboratory-Based Marine Fluid-Substrate Studies @SSRN papers.ssrn.com/sol3/papers....

submitted 168 days ago • 0 comments

Joined #NewPISlack 👀

submitted 168 days ago • 0 comments

12月1日から、国立遺伝学研究所の所長として赴任しました近藤滋です。日本の基礎科学を盛り上げるために、精一杯働く所存です。皆さん、ご協力をお願いいたします。所長挨拶： www.nig.ac.jp/nig/ja/about... 学生へのメッセージ： www.nig.ac.jp/nig/ja/phd-p... どちらも、楽しく読んでいただけるように書きました。特に、学生へのメッセージの方ができが良いので、まずそちらからお読みいただけますと幸いです。

submitted 172 days ago • 0 comments

Hey researchers (especially non-native speakers of English), do you use generative AI to write papers? If so, how do you (or how should we) acknowledge it? I haven't, but am thinking how to write next one.

submitted 173 days ago • 1 comment

Better late than never #alphafold3 (Chlamydomonas reinhardtii cytoplasmic dynein 1b heavy chain from Phytozome)

submitted 176 days ago • 1 comment

Bacterial rheotaxis is ENHANCED in non-Newtonian fluids! This work is in collaboration with Arnold Mathijssen and Albane Thery. Read more about our experiments and simulations in our new PNAS manuscript at pnas.org/doi/10.1073/... @sorheology.bsky.social @pnas.org

submitted 179 days ago • 1 comment

I made a (quite incomplete) starter pack of Japanese or in-Japan researchers. Self-identify, and I will add you! 日本人/日本にいる研究者のスターターパックを作りました。リプしていただければ追加します！ go.bsky.app/7kMz86x

submitted 179 days ago • 1 comment

I thought I had a picture of Ginkgo in the Koishikawa Botanical Garden of the University of Tokyo, but actually it was "精子発見のソテツ" (cycad from which sperm were discovered). April 2024

submitted 180 days ago • 1 comment

Mitosis in a green alga. The cell grows until it is tetralogy, then divides twice to form 4 new haploid cells. This is one of my study algae, Oophila amblystomatis, a symbiotic green alga. #protistsonsky #protistaday

submitted 185 days ago • 1 comment

Sperm packet of the colonial volvocine green alga, Pleodorina starrii Check: journals.plos.org/plosone/arti... #fluorescenceFriday

submitted 186 days ago • 0 comments

I already talked to some people, but as a member of Associate Editorial Board of Cytoskeleton Journal, I am putting together a special issue "Structures of microtubules and microtubule-related proteins". #microtubule #structure #cytoskeleton

submitted 188 days ago • 1 comment

As a new PI (had a lab in this summer), I'm also wondering: in what case to post arXiv/bioRxiv and in what case not to? Probably different between biology/physics and theory/simulation/experiment...🤔

submitted 191 days ago • 0 comments

Was trying to obtain #bioRxiv information and automatically write into Discord using #Python . Want a Raspberry Pi to run regularly. Keyword extraction by Spacy does not always work... #pyladies

submitted 191 days ago • 1 comment

Reposting our microPublication now indexed in PubMed: We analyzed the movement of the unicellular green alga Chlamydomonas using #DeepLabCut, a deep learning-based tracking tool originally developed for animal behavior studies. pubmed.ncbi.nlm.nih.gov/40331205/ Original videos: 🧵 #protistsonsky

Reposting our microPublication now indexed in PubMed: We analyzed the movement of the unicellular green alga Chlamydomonas using #DeepLabCut, a deep learning-based tracking tool originally developed for animal behavior studies. pubmed.ncbi.nlm.nih.gov/40331205/ Original videos: 🧵 #protistsonsky

Spring in northern Japan🌸

Our analysis of the rotational movement of Chlamydomonas uniflagellar mutant using #DeepLabCut has just been published in microPublication Biology! micropublication.org/journals/bio...

Our analysis of the rotational movement of Chlamydomonas uniflagellar mutant using #DeepLabCut has just been published in microPublication Biology! micropublication.org/journals/bio...

Oxygen gradients shape E. coli motility patterns as they run away from O2! - 😍

Asked similar question before but I try again. Anyone knows proteins that localize like this? This protein is present in diplonemids/bodonids/euglenids/Naegleria, which have two flagella, but not in trypanosomatids that have just one flagellum. Potentially interesting for flagella/cilia community?

We have posted our new #preprint regarding the track recognition mechanism of dynein-2 that works in #cilia on bioRxiv @biorxivpreprint.bsky.social!! www.biorxiv.org/content/10.1... 1/8 🧵

Dynein-2 is tuned for the A-tubule of the ciliary doublet through tubulin tyrosination https://www.biorxiv.org/content/10.1101/2025.01.27.635025v1

Proud to be part of this paper published in @naturecomms.bsky.social. Using high-speed AFM, we have visualized the real-time translocation of substrate polypeptide by the single molecule of SecYEG-SecA!!! Please check this amazing video taken by high-speed AFM!!! www.nature.com/articles/s41...

Happy New Year from the northside of Japan🌅🎍❄️

New Year decorations at our lab🎍

Did you know #diatoms are motile? These tiny glass cells have no cilia or flagella and a rigid body yet can glide on surfaces using a specialised slit in the cell wall called the raphe! What is the functional morphology of the raphe? All revealed in our new preprint www.biorxiv.org/content/10.1...

International Society of Protistologists is funding two symposia at the 16th International Congress of Protistology in Seoul, South Korea. Proposals are due 30 January 2025 #protist #protistsonsky protistologists.org/programs/fun...

🍾Our small #UExM adventure is only starting! #ProtistsOnSky We are happy to announce that the Moore Foundation will be funding our efforts in creating an Expansion Microscopy atlas of #Microbial #Eukaryotes with @gautamdey.bsky.social @UNIGE @embl.org LINK: www.unige.ch/sciences/chi... 1/4

📢 Please re-share! New Preprint Alert -- in collaboration w/ @prannoysuraneni.bsky.social @coralprof.bsky.social and others @univmiami.bsky.social @miamirosenstiel.bsky.social FlumeX: A Modular Flume Design for Laboratory-Based Marine Fluid-Substrate Studies @SSRN papers.ssrn.com/sol3/papers....

Joined #NewPISlack 👀

Hey researchers (especially non-native speakers of English), do you use generative AI to write papers? If so, how do you (or how should we) acknowledge it? I haven't, but am thinking how to write next one.

Better late than never #alphafold3 (Chlamydomonas reinhardtii cytoplasmic dynein 1b heavy chain from Phytozome)

Bacterial rheotaxis is ENHANCED in non-Newtonian fluids! This work is in collaboration with Arnold Mathijssen and Albane Thery. Read more about our experiments and simulations in our new PNAS manuscript at pnas.org/doi/10.1073/... @sorheology.bsky.social @pnas.org

I made a (quite incomplete) starter pack of Japanese or in-Japan researchers. Self-identify, and I will add you! 日本人/日本にいる研究者のスターターパックを作りました。リプしていただければ追加します！ go.bsky.app/7kMz86x

I thought I had a picture of Ginkgo in the Koishikawa Botanical Garden of the University of Tokyo, but actually it was "精子発見のソテツ" (cycad from which sperm were discovered). April 2024

Mitosis in a green alga. The cell grows until it is tetralogy, then divides twice to form 4 new haploid cells. This is one of my study algae, Oophila amblystomatis, a symbiotic green alga. #protistsonsky #protistaday

Sperm packet of the colonial volvocine green alga, Pleodorina starrii Check: journals.plos.org/plosone/arti... #fluorescenceFriday

I already talked to some people, but as a member of Associate Editorial Board of Cytoskeleton Journal, I am putting together a special issue "Structures of microtubules and microtubule-related proteins". #microtubule #structure #cytoskeleton

As a new PI (had a lab in this summer), I'm also wondering: in what case to post arXiv/bioRxiv and in what case not to? Probably different between biology/physics and theory/simulation/experiment...🤔

Was trying to obtain #bioRxiv information and automatically write into Discord using #Python . Want a Raspberry Pi to run regularly. Keyword extraction by Spacy does not always work... #pyladies

Pattern formation of microalgae (cyanobacteria?) in Onuma Quasi-national Park, Nanae, Hokkaido, Japan. Early November 2024

What ChatGPT thinks of Chlamydomonas

Barium dance of Paramecium youtu.be/3PTog4O_agU?...