brainglobe.info - Profile | ThreadSky | a Reddit-style client for Bluesky

BrainGlobe has a new (c)atlas, for the domestic cat, Felis catus. 🐱 For more details about this (and the rest of BrainGlobe), please see the blog: brainglobe.info/blog/cat-atl...

submitted 1 day ago • 0 comments

Excited to announce that we will be taking part in the Google Summer of Code this year! If you'd like to get paid to contribute to BrainGlobe, please get in touch. Applications will be accepted via @neuroinformatics.dev. Full details here: neuroinformatics.dev/get-involved...

submitted 2 days ago • 0 comments

Excited to announce that we will be taking part in the Google Summer of Code this year! If you'd like to get paid to contribute to open-source neuroscience software, please get in touch. Full details here: neuroinformatics.dev/get-involved...

submitted 2 days ago • 1 comment

Nice package to load BrainGlobe atlases into Blender - "BlenderBrain". github.com/ArtemKirsano...

submitted 8 days ago • 0 comments

BrainGlobe has three new mouse brain atlases including: - Multimodal (LSFM & MRI) developmental atlas from Yongsoo Kim's lab - Multimodal (LSFM & MRI) adult atlas from Gubra - High-resolution Australian mouse brain atlas (MRI) See the blog for more details: brainglobe.info/blog/mouse-a...

submitted 9 days ago • 0 comments

New version of brainglobe-space released (v1.0.3). Includes small changes including updating supported Python versions. Full details: github.com/brainglobe/b...

submitted 10 days ago • 0 comments

New version of morphapi released (v0.3.1) with a minor bug fix. Full details: github.com/brainglobe/m...

submitted 10 days ago • 0 comments

New release of the BrainGlobe Atlas API (v2.1.0). Some small changes, and support for custom offline atlases. Full details: github.com/brainglobe/b...

submitted 10 days ago • 0 comments

New release of brainglobe-heatmap (v0.5.5) which contains a small bug fix. Full details: github.com/brainglobe/b...

submitted 10 days ago • 0 comments

New cellfinder version release (v1.4.1) which contains a small bug fix. Full details: github.com/brainglobe/c...

submitted 10 days ago • 0 comments

Excellent paper that makes great use of a not very well-known BrainGlobe tool to make many of the figures, brainglobe-heatmap: brainglobe.info/documentatio...

submitted 10 days ago • 0 comments

BrainGlobe has a new atlas, the first non-human primate, the gray mouse lemur (Microcebus murinus). For more details about this (and the rest of BrainGlobe), please see the blog: brainglobe.info/blog/mouse-l...

submitted 25 days ago • 0 comments

BrainGlobe has a new atlas, the prairie vole! For more details see the blog: brainglobe.info/blog/prairie... Original paper: doi.org/10.7554/eLif...

submitted 121 days ago • 0 comments

BrainGlobe has a new atlas, the Axolotl (Ambystoma mexicanum)! For more details see the blog: brainglobe.info/blog/axolotl... Original paper: doi.org/10.1038/s415...

submitted 200 days ago • 0 comments

Nice tutorial on how to combine BrainGlobe and BiaPy to detect cells in whole brain microscopy images. We're always interested in ways to make our software interoperable with other tools. biapy.readthedocs.io/en/latest/tu...

submitted 208 days ago • 0 comments

BrainGlobe now includes an atlas with barrel column annotations from Bolaños-Puchet & Teska et al. Full details on the blog: brainglobe.info/blog/barrel-... Thanks to Axel Bisi for bringing this to BrainGlobe! Original paper: doi.org/10.1162/imag...

submitted 211 days ago • 1 comment

We've just released the "brainmapper" widget allowing analysis of cellular distributions in whole-brain microscopy images entirely within napari. Full details available on the blog: brainglobe.info/blog/brainma...

submitted 212 days ago • 1 comment

We've added a new atlas - the blind Mexican cavefish, Astyanax mexicanus. More details on the blog: brainglobe.info/blog/cavefis...

submitted 253 days ago • 0 comments

Nice piece about our team featured on the Sainsbury Wellcome Centre Blog. www.sainsburywellcome.org/web/blog/neu...

submitted 266 days ago • 0 comments

cellfinder 1.3.0 has been released! We've moved to PyTorch, so we recommend that you install the new version in a fresh environment. Your existing models will work in the new version, and it should be a bit faster and easier to install. brainglobe.info/blog/cellfin...

submitted 270 days ago • 0 comments

BrainGlobe version 1.1.0 is released! See the blog for more info - brainglobe.info/blog/braingl... "pip install brainglobe -U" to update TL;DR - cellfinder is faster and brainglobe is prettier

submitted 289 days ago • 0 comments

To improve reproducibility in (systems) neuroscience we have developed: - NeuroBlueprint (neuroblueprint.neuroinformatics.dev), a simple, standard data folder specification - datashuttle (datashuttle.neuroinformatics.dev), to automate the creation, validation and transfer of NeuroBlueprint projects

submitted 297 days ago • 1 comment

A new version of brainreg has been released (v1.0.8). This fixes a bug that caused registration via the napari plugin to be less accurate that via the command line tool. "pip install brainreg==1.0.8" to update. github.com/brainglobe/b...

submitted 302 days ago • 0 comments

The May 2024 BrainGlobe roadmap is published! We'd love to get any feedback about our plans for the next year. brainglobe.info/community/ro...

submitted 304 days ago • 0 comments

New version of brainrender released, with a new Line Actor (thanks to Paul Brodersen!). To update: pip install brainrender -U github.com/brainglobe/b...

submitted 316 days ago • 0 comments

We'd like to introduce movement, a free and open-source Python package for analysing body movements, designed to aid the study of animal behaviour in neuroscience. Website: movement.neuroinformatics.dev Examples: movement.neuroinformatics.dev/examples/ind... GitHub: github.com/neuroinforma...

submitted 345 days ago • 2 comments

Processing neuroanatomy data in napari? You may find brainrender-napari (github.com/brainglobe/b...) useful. We're slowly porting the original brainrender to napari to provide a consistent neuroanatomy data analysis and visualisation environment.

submitted 365 days ago • 1 comment

BrainGlobe Version 1 has been officially released, bringing all tools under a single umbrella (enabling "pip install BrainGlobe") and simplifying maintenance. If you use cellfinder, brainreg or brainreg-segment, please read the the blog for more details: brainglobe.info/blog/version...

submitted 418 days ago • 0 comments

Interested in making high-quality 2D & 3D neuroanatomical visualisations across multiple species? New versions of brainrender (github.com/brainglobe/b...) and brainglobe-heatmap (github.com/brainglobe/b...) have been released.

submitted 442 days ago • 0 comments

Anyone coming to #sfn? Come along to our @brainglobe.bsky.social poster on Wednesday afternoon, or get in touch to chat about BrainGlobe or any of our other projects (neuroinformatics.dev). #SfN2023 #Neuroscience

submitted 480 days ago • 0 comments

The first part of BrainGlobe restructuring is complete. If you use any of the BrainGlobe registration tools (brainreg, brainreg-napari or brainreg-segment) please read this changelog - brainglobe.info/community/re...

submitted 481 days ago • 0 comments

Over the next few months, BrainGlobe is undergoing restructuring. All existing tools will remain, but how you install and use them may change. For more details, please see the blog (brainglobe.info/blog). If you have any questions, please get in touch via Zulip (brainglobe.zulipchat.com).

submitted 486 days ago • 0 comments

Hi everyone! The BrainGlobe Initiative exists to facilitate the development of interoperable Python-based tools for computational neuroanatomy, particularly in model organisms. For more details please see brainglobe.info or chat with us at brainglobe.zulipchat.com. #neuroscience

submitted 487 days ago • 0 comments