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johannconfais.bsky.social
Bioinformatics @urgi-inrae.bsky.social Interested in #Genomics, #Evolution, #Transposons, Repeat annotation, #Pangenomic, #KnowledgeGraph https://eng-urgi.versailles-grignon.hub.inrae.fr/about-us/team/johann-confais join the TEhub : @tehub.bsky.social
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GrAnnoT, a tool for effecient and reliable annotation transfer through pangenome graph https://www.biorxiv.org/content/10.1101/2025.02.26.640337v1

submitted 3 days ago • 0 comments

A great opportunity in a nice place 👇

submitted 12 days ago • 0 comments

Besoin de vous former à #Python ? Notre cycle de formation "Bioinformatique par la pratique" propose ce module introductif à Jouy-en-Josas sur 2 jours (31 mars, 1er avril). 📝 Inscriptions et programme sur documents.migale.inrae.fr/trainings.html

submitted 20 days ago • 1 comment

A couple of months ago I tried the @peercommunityin.bsky.social publishing system & I can only recommend it (pun intended). Please see below to change how we publish science 1/n

submitted 34 days ago • 1 comment

Dive into the massive genomes of plant pathogenic rust fungi! 🌿🍄 Our study reveals how ancestral & recent bursts of transposition have shaped these remarkable genomes. 👏 Congrats to @Emma______C on her 1st PhD paper! 🙌 @SebbyRust, Emmanuelle Morin www.biorxiv.org/content/10.1...

submitted 50 days ago • 0 comments

The great @johannconfais.bsky.social on a reference-free approach (panREPET) to annotate #Transposons in #pangenomes 🧬

submitted 50 days ago • 1 comment

Great presentation from @johannconfais.bsky.social at #PAG2025 #PAG32 on the first result obtained with panREPET tool a non reference centric approach

submitted 50 days ago • 0 comments

REPET got a complete overhaul in version 4.0 ! Etienne Bardet from @urgi-inrae.bsky.social presents the updates in #PAG32 forgemia.inra.fr/urgi-anagen/...

submitted 51 days ago • 0 comments

Great tall from @clementgoubert.bsky.social to present GraffiTE: a pipline that finds polymorphic TE in genomes #PAG32 github.com/cgroza/Graff...

submitted 52 days ago • 0 comments

@johannconfais.bsky.social and @clementgoubert.bsky.social are presenting @tehub.bsky.social at #PAG2025, an amazing resource and driven community for anyone interested in transposable element

submitted 52 days ago • 1 comment

#PAG32 I'd bet that every genome studied at PAG has a least 1 #Transposon, if not thousands! Find us on Sunday for an exciting session on #mobileDNA!

submitted 54 days ago • 0 comments

Great presentation from Michael Alaux in #BrAPI session #PAG2025, how the french community use BrAPI to share data between several tools

submitted 53 days ago • 0 comments

Amazing talk of @nico971.bsky.social from @urgi-inrae.bsky.social on RepetDB #PAG32 urgi.versailles.inra.fr/repetdb/begi...

submitted 53 days ago • 0 comments

We are opening a call for applications 2025 – Creation of new junior research groups at the Institut Pasteur in Paris @pasteur.fr all details on our web site : research.pasteur.fr/en/call/call...

submitted 87 days ago • 1 comment

Scraping who is on the platform working on #TransposableElements or other types of #RepetitiveDNA Have fun! go.bsky.app/7t5GQAP

submitted 115 days ago • 12 comments

Et c est reparti, 2e journée de l atelier pangénomique @inrae-france.bsky.social à Versailles du SaPI PanAnnot #CATI_GREP #CATI_BARIC @johannconfais.bsky.social On discute des outils de pangénomique et de leur impact sur nos thématiques de travail.

submitted 245 days ago • 0 comments

We are happy to announce that the recording of the last #TEhub workshop on #benchmark at #ICTE2024 is available on our YouTube channel! youtube.com/watch?v=3qY0... Please share widely! #Transposons #TEsky

submitted 300 days ago • 0 comments

#TEhub workshop on #benchmark starts with a full room listening to the wisdom of @hquesneville and Arian Smit on the considerations, pitfalls and ways to assess #Transposons annotation. Soon on our YouTube channel! #TEsky

submitted 316 days ago • 0 comments

📢 #hiringalert #JobOpening #Concours Rejoignez-nous en tant qu'ingénieur développeur de pipeline d'analyse et #DevOps @INRAE_URGI sur Versailles ou Toulouse. Plus d'info sur urgi.versailles.inrae.fr/About-us/News/… @inrae-france.bsky.social

submitted 376 days ago • 0 comments

Only one more week to register and submit an abstract to #ICTE2024 (February 15th). There will be no extensions! The abstract submission process can be so 😱 please take your time to go through all the cases to fill. There are 22 slots for speakers. Be on time, and come showcase your research!

submitted 393 days ago • 0 comments