kgagalova.bsky.social - Profile | ThreadSky | a Reddit-style client for Bluesky

Pirates in town Ale STORM

submitted 8 days ago • 0 comments

#BOSC2025 is now accepting abstract submissions for talks and posters about #OpenSource #bioinformatics or #OpenScience 🍐 #BOSC2025 will include a joint session with the Bio-Ontologies and Knowledge Representation COSI, @bokr.bsky.social Submissions close April 17: www.open-bio.org/events/bosc-...

submitted 20 days ago • 0 comments

Reflecting on our time at TU Braunschweig as it comes to an end, we are proud to share some milestones from the past three years. Here is one of them: our review on flavonoid transport doi.org/10.3390/plan... #PlantScience #Flavonoids @bpucker.bsky.social 1/🧵

submitted 37 days ago • 1 comment

panHiTE: a comprehensive and accurate pipeline for TE detection in large-scale population genomes https://www.biorxiv.org/content/10.1101/2025.02.15.638472v1 🧬🖥️🧪 nextflow: https://github.com/CSU-KangHu/HiTE tutorial https://github.com/CSU-KangHu/HiTE/wiki/panHiTE-tutorial

submitted 12 days ago • 0 comments

🎤 Catch us at #GRDCUpdates on Monday! Don't miss CCDM's students Mohitul Hossain, Viet-Cuong Han, Anjana Sharma & Varthini Govindaraju Punithan presenting in the New Researchers session. 📅 Mon, 24 Feb | ⏰ 1:40 PM | 📍 Session 8 #GRDC #CurtinUni

submitted 13 days ago • 0 comments

ActSeek: Fast and accurate search algorithm of active sites in Alphafold database https://www.biorxiv.org/content/10.1101/2025.02.11.637678v1 🧬🖥️🧪 https://github.com/vttresearch/ActSeek (noncommercial)

submitted 16 days ago • 0 comments

ActSeek: Fast and accurate search algorithm of active sites in Alphafold database [new] Finds proteins with similar active sites to a query within structural databases (AlphaFold) using a fast, computer vision-inspired approach.

submitted 17 days ago • 0 comments

submitted 23 days ago • 0 comments

The Baltic states Estonia, Latvia and Lithuania have today fully decoupled their energy grid from Russia. At the moment they are running in an island mode, but starting tomorrow the energy grid will be reconnected with the European Union.

submitted 25 days ago • 207 comments

I rather enjoy this event. It's when scientists present their research as comedy standup. #futurescience #fringeworld #realscience

submitted 25 days ago • 0 comments

k-mer approaches for biodiversity genomics https://genome.cshlp.org/content/early/2025/01/31/gr.279452.124.abstract 🧬🖥️🧪 tutorials: https://github.com/KamilSJaron/k-mer-approaches-for-biodiversity-genomics/wiki

submitted 25 days ago • 0 comments

getphylo is finally official! Build phylogenetic trees directly from genbank files - at breakneck speed! I'd like to thank everyone who provided feedback and encourage you to continue. Improving getphylo doesn't stop now the paper is out! 1/5 🧪 bmcbioinformatics.biomedcentral.com/articles/10....

submitted 42 days ago • 2 comments

Exactly what I was looking for today!

submitted 27 days ago • 0 comments

Dot plots are an effective (if old school!) way to visualise the pairwise comparison of genomes. For our recent pangenomics project (rdcu.be/d8PZ7), I wrote a small Python package to produce publication ready dot plots. Check it out! github.com/drboothtj/do... pypi.org/project/dotp... 🧪🧬🦠

submitted 27 days ago • 0 comments

Trust in 🥼 and their role in society across 68 countries www.nature.com/articles/s41...

submitted 27 days ago • 0 comments

Out after peer review: "Gretl—variation GRaph Evaluation TooLkit". With gretl, you can compare the output of genome graph construction pipelines with different parameters and perform an in-depth analysis of individual graphs. #plantscience academic.oup.com/bioinformatics/article/41/1/btae755/7932228

submitted 30 days ago • 0 comments

Not only registration open, but also project proposals - really excited to see what kinds of things people are excited to work on this time around 🤩 New instructions on how to add to the hackathon website page are here: nf-co.re/events/2025/...

submitted 30 days ago • 0 comments

Application to host the 5th International Wheat Congress in 2028 is now open! Hugely popular. The last one in Australia attracted over 800 delegates! 💪 Please RT 🙏

submitted 29 days ago • 0 comments

Solo-hackathon - day 1: Sometimes, you just gotta ditch the usual grind and work on your own ideas. A personal hackathon is the perfect excuse to dive into that tool you’ve been thinking about, test out a wild research idea, or just mess around with code without deadlines breathing down your neck.

submitted 30 days ago • 3 comments

We're launching our Bluesky feed with Starships! Check out our December issue for a featured review on these gigantic transposable elements written by Emile Gluck-Thaler and colleagues. There's plenty more inside the issue! The complete Table of Contents is here: www.cell.com/trends/genet...

submitted 82 days ago • 0 comments

Double Feature! New releases of #EnTAP - functional annotation of transcriptomes & gene models AND #EASEL - structural annotation of euks - especially large & complex #genomes! gitlab.com/PlantGenomic... entap.readthedocs.io/en/latest/ Learn how they work! www.youtube.com/watch?v=01ZC...

submitted 126 days ago • 0 comments

Prof. Justin Whitehall on conifers and Christmas tree breeding. Their genetic background is highly complex and it's a scientific jigsaw 🧩. Very curious about the new discoveries in the field

submitted 31 days ago • 0 comments

Good morning & welcome to #Caturday Good things come to those who believe, better things come to those who are patient, and the best things come to those who don't give up.

submitted 32 days ago • 23 comments

1/ 🧵 No, you do not always need Single-Cell RNA-seq. Single-cell RNA-seq is popular and powerful, but it's not always the best choice. Here's why you should think carefully before diving in.

submitted 33 days ago • 2 comments

It's fantastic seeing the number of local sites grow and grow for the upcoming @nf-co.re #hackathon ! 🎉 Already a new record and with better global spread than ever before 🌎🌏🌍 If you think you can host a site, tell us now! General registration opens in a few days 🎟 nf-co.re/events/2025/...

submitted 36 days ago • 0 comments

We are happy to announce that the recording of the last #TEhub workshop on #benchmark at #ICTE2024 is available on our YouTube channel! youtube.com/watch?v=3qY0... Please share widely! #Transposons #TEsky

submitted 299 days ago • 0 comments

✨🧬Happy to share our latest preprint about this exciting plant: ✨🧬 Genome sequence and RNA-seq analysis reveal genetic basis of flower coloration in the giant water lily Victoria cruziana doi.org/10.1101/2024... #bioinformatics #genomics #transcriptomics

submitted 260 days ago • 0 comments

🚀 Exciting news for genome enthusiasts! 🎉 Our latest MGSE update now supports long reads and contains new data analyses for mapping-based genome size estimation. Curious about the details? Check it out: doi.org/10.1101/607390 #Genomics #Python @puckerlab.bsky.social @tubraunschweig.bsky.social

submitted 131 days ago • 0 comments

FlashFold: a standalone command-line tool for accelerated protein structure prediction www.biorxiv.org/content/10....

submitted 37 days ago • 0 comments

FlexLMM: a Nextflow linear mixed model framework for GWAS https://academic.oup.com/bioinformatics/advance-article/doi/10.1093/bioinformatics/btaf021/7954687 🧬🖥️🧪 https://github.com/birneylab/flexlmm

submitted 47 days ago • 0 comments

I’ve closed my X account due to recent events and will now be using BlueSky. Excited to connect in a better space for meaningful conversations! #GoodbyeX #DigitalFreedom

submitted 38 days ago • 0 comments

Western Australia is home to incredible sand dunes—here’s a shot from my hike near Hartsy Sand Dunes.

submitted 38 days ago • 0 comments

Yes, but can it run Doom? `nextflow run doom` ✅ @nextflow.io (by @jordeu.bsky.social 🌟) github.com/nextflow-io/...

submitted 42 days ago • 2 comments

I am happy to be part of the new cohort of Nexflow ambassadors! Nextflow has been a game-changer in making bioinformatics workflows scalable, reproducible, and accessible. Thank you to the community for fostering an environment where ideas and tools come together to solve real-world challenges

submitted 43 days ago • 0 comments

Nvidia project DIGITS introduces a personal AI supercomputer for developers and data scientists with generative AI. The project looks exciting: www.forbes.com/sites/janaki...

submitted 43 days ago • 0 comments

highlighting the work of my former lab. Congratulations for this achievement! ntSynt-viz: Visualizing synteny patterns across multiple genomes biorxiv.org/content/10.110…

submitted 44 days ago • 0 comments

We've just put up the first batch of local sites for the upcoming @nf-co.re #hackathon (March 2025) on the website: nf-co.re/events/2025/... We've had a great response so far, with 23 sites lined up (already a record!), but we'd love more! Are you able to book a meeting room for a local site?

submitted 50 days ago • 1 comment

For those adding code to Bioconda 🤗👩‍💻

submitted 47 days ago • 0 comments