Profile avatar
protobio.bsky.social
Learn to code for science. "Everything simple is false. Everything complex is unusable." - Paul Valery If you want to read one of our Medium articles but can't afford membership, message us for a free link. Yolo. (Banner: Nicolas Thomas, Unsplash)
31 posts 101 followers 262 following
Prolific Poster
Conversation Starter

So. It has officially happened. I have been officially let go from my position at CDC. I wasn’t a probationary employee. I had stellar performance reviews every year. I’ll be ok. But please understand that many worked HARD to get into these positions and were doing great public health work.

We want to take a moment to express how proud we are of you, America. You have stood up and spoken out every step of the way—especially when Congress and the media remained silent. When we called for help, you answered.

If you are on Bluesky, follow the Alt government departments. These are federal employees sharing information. Alt National Parks Alt CDC Alt NOAA Alt Health and Human Services Alt DHS They are being told to delete data and files (against the law). They are risking everything to share information.

The most important thing I can tell everyone that I've learned from being a YouTuber who explains how stuff works is that each and every time I thought "this is common knowledge and doesn't need to be explained" I was wrong.

Reminder that a study on lizard saliva eventually led to the development of Ozempic so be real wary of the criticism of studies and funding that sounds non-sensical when presented with no context.

Our gut microbiome and its metabolites have key interactions with our immune response to cancer and success from cancer immunotherapy. Nice perspective @jclinical-invest.bsky.social www.jci.org/articles/vie...

The feasibility of patching a severely damaged heart with stem cells as a bridge to transplant, actualized in a 46-year-old woman @nature.com www.nature.com/articles/s41... www.nature.com/articles/d41...

Despair not (yet) "If a control experiment fails, does that mean that the entire experiment is poorly designed and you must restart from scratch? Often, yes— but not always. I present five examples where failed control experiments triggered entirely new fields of research."

When the government is gagged and not allowed to talk about science, the people will continue. Long live science and journalism. Long live the First Amendment. #science #usa

Welcome immigrants from X interested in science to the friendlier skies of @bsky.app, as documented by a new @nature.com survey (but you already knew that 😉) "Bluesky is much better for science. There is much less toxicity, misinformation, and distractions." www.nature.com/articles/d41...

Red knots taking off. Bald Hill Beach. 🪶 #birds

Other scientific journals should follow. I've requested this of the journal where I'm an editor. Other journal editor friends, join us!

Altmetric lets you know where your research is being talked about all around the Internet! Blogs, newspapers, Reddit, and more.

If anyone happens to need it this week for...reasons...this is the best graphic on the complexity of human sex determination I've ever seen. I use it in an undergrad course on gene regulatory mechanisms. Shoutout to @unamandita.bsky.social! www.scientificamerican.com/article/beyo...

A study in Nature Medicine reports that a surgically implanted brain–computer interface can detect and decode finger movements in a person with paralysis, allowing them to play a video game. #Medsky 🧪

This is my plan moving forward. Part 1

A high-throughput platform for single-molecule tracking identifies drug interaction and cellular mechanisms. https://buff.ly/40nMuKL

Them: Please summarize your 80K word book into a 45 minute talk. Me: Sure; fun challenge! Them: Now summarize your book in a 2 minute video that anyone can connect with. Me: 😲. That's ~250 words; a compression of 320x. Yikes! I do not know that algorithm ... press.princeton.edu/books/hardco...

World Central Kitchen (@wck.org) also has free food trucks for evacuees and first responders posted throughout the city. Check out wck.org/news/meal-lo... and app.watchduty.org to see Red Cross's and WCK's locations in LA.

As wildfires rage in LA, this graphic in @cenmag.bsky.social looks at one way chemistry can be used to tackle them: cen.acs.org/environment/... #ChemSky 🧪

The worst problem we have? it's not fraud, or mistreatment, or whatever. It's that people and organisations that run science have no understanding of human motivation. Which leads inevitably to fraud, mistreatment of others, and whatever. www.science.org/content/arti...

SciPy docs for filters are kinda not straightforward, so we made an article to clear things up. Filter your digital signals and time series with Python, easy peasy! Comment if you need the free friend link. medium.com/@protobioeng... #python #datascience #bioengineering #neurosky #science #dsp

Trying to analyze a graph but it's missing a bunch of data? Check out how to fill in missing data in time series and digital signals with our easy Python tutorial. Message us if you need a free link. medium.com/@protobioeng... #digitalsignalprocessing #python #datascience #bioengineering #science

We thank the reviewers for their suggestions and believe they have substantially improved the paper

When I say Bluesky is a bizarre and exciting experiment, this is both /not at all/ and /exactly/ what I mean.

Play with MRIs, CT scans, and more in Python with just a few lines of code: medium.com/@protobioeng... #neuroradiology #mri #ctscan #medicalimaging #neuroskyence #medicine #bioengineering

Keeping track of all 100 versions of your code is tough. What if a program did it for you? Check out our 3-step tutorial on how to make a Git repository (a folder that tracks your code changes): medium.com/@protobioeng... #git #github #learntocode #python #rprogramming #datascience #biostatistics

I recently sat down with The BME Grad Podcast available on, e.g., Spotify. My episode "Wellness for Biomedical Engineers" is now available! open.spotify.com/episode/5WFj...

This new study, led by Shigeki Watanabe and partially conducted in the MBL’s Neurobiology course, challenges a fundamental tenet in neuroscience about the shape of axons and proposes a new model for understanding how information is transmitted in the brain. #science 🧪 🧠

More evidence of a brain microbiome. Time to replicate the experiment in rodents, then primates. #brain #neuroscience #psychology #neurobiology #microbiology www.quantamagazine.org/fish-have-a-...

#science

Some food for thought for any of our readers who've checked out our EEG, MRI, or Digital Signal Processing in Python tutorials. Dr. Miller will be a scientist to keep your eye on for cool neuroimaging stuff!

Find the peaks in a digital signal or time series easily with SciPy and Python. Works for heartbeat data, EEGs, flood data, step counting with accelerometers, and more. Tutorial on Medium: medium.com/@protobioeng... #datascience #python #scipy #digitalsignalprocessing #bioengineering #ekg #eeg

We recently joined forces with the University of Melbourne to create the Collaborative Centre for Genomic Cancer Medicine. It's Director Prof Sean Grimmond and A/Prof David Westerman joined ABC Melbourne to talk about the new centre's mission and future of #genomicmedicine. A fascinating listen!

🧪 E11 Bio is excited to share a major step towards brain mapping at 100x lower cost, making whole-brain connectomics at human & mouse scale feasible (🧠→🔬→💻). Critical for curing brain disorders, building human-like AI systems, and even simulating human brains. Read more: e11.bio/news/roadmap

🚀 We’re hiring! Forest Neurotech is looking for a Software Engineering Lead to build the core systems powering our ultrasound neurotech platform. As a nonprofit FRO, we're advancing science for public good. If you’re excited about neurotech & impact let’s talk. 🌍🧠 forestneurotech.org/jobs