tibuch.bsky.social
Machine Learning Expert at Friedrich Miescher Institute for Biomedical Research | bio-image analyst | he/him
6 posts
615 followers
767 following
Regular Contributor
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Nice! Can you add me too?
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My #BioimageTooloftheDay
is the fantastic Introduction to Bioimage Analysis book by Pete Bankhead
bioimagebook.github.io/index.html
Because seriously, this is awesome
Also how can you get started without a good book
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Congratulations! 🥂
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☝️🙏
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A working example can be found here:
fmi-faim.github.io/example-proj...
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From an end-user perspective I find pixi very simple, especially if one uses pixi-tasks. A standard execution pipeline now boils down to:
1. WD=runs/dataset pixi run build_config
2. WD=runs/dataset pixi run workflow
3. WD=runs/dataset pixi run visualization
No conda env create, conda activate...
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☝️
Thank you!